Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P22
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888     28   5.9  
04_04_0820 - 28342925-28343092,28343194-28343232,28343664-283437...    28   5.9  
04_03_0948 - 21021021-21021040,21022743-21022818,21023167-210232...    28   5.9  
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733...    27   7.7  

>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
          Length = 725

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 319 TISTRGQQILGIGLHSQGRKFPKTRCDRL 233
           T+ST      G+GL +Q  K  + RCD L
Sbjct: 186 TMSTEADMAKGVGLFAQWDKVEEPRCDNL 214


>04_04_0820 -
           28342925-28343092,28343194-28343232,28343664-28343729,
           28343847-28343918,28344008-28344127,28344207-28344752
          Length = 336

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 201 QVFELRNKCQSSGTDRRRSGTPDAVPNGAADSTESTSDHS 82
           ++  L   C SSG+DR +    +    G A   +S + HS
Sbjct: 178 EITRLARSCSSSGSDRNKKKLSEVRGGGKAKKFKSETSHS 217


>04_03_0948 -
           21021021-21021040,21022743-21022818,21023167-21023214,
           21023655-21023745,21024524-21024636,21024718-21024778,
           21025816-21026007,21026029-21026762
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 444 LCCDMIDVVIDISCIYGMVDETETNTFNNESSSLIKLNNGTVLYLREVNK 295
           L CD  +    +SC    V E  T+ +    S   KL+ G V     +N+
Sbjct: 219 LICDSCEAAFHLSCCIPRVHEVPTDEWKKPKSQYGKLSEGKVKSSGNINQ 268


>08_01_0764 -
           7332969-7333870,7334044-7334369,7334712-7335384,
           7336195-7336219
          Length = 641

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 444 LCCDMIDVVIDISCIYGMVDETETNTFNNESSSLIKL-NNGTVLYLREVNKFLALVCILR 268
           LCC   DV    SC   MVD T ++T + E+++ ++       ++  E+  F  LV +  
Sbjct: 305 LCCGA-DVQKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQPQVFFVEITPFSVLVVLKY 363

Query: 267 EENFQKQ 247
           ++N  ++
Sbjct: 364 QDNIAEE 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,934
Number of Sequences: 37544
Number of extensions: 244514
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)