Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P22
(562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-7|CAB60290.1| 338|Caenorhabditis elegans Hypothetical pr... 139 1e-33
AL110480-3|CAB60328.1| 338|Caenorhabditis elegans Hypothetical ... 139 1e-33
U21321-5|AAL11111.1| 553|Caenorhabditis elegans Hypothetical pr... 28 5.3
U21321-4|AAG00049.1| 587|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z92806-1|CAB07258.1| 802|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical... 27 7.0
U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ... 27 9.2
AF047657-3|AAK18947.2| 326|Caenorhabditis elegans Serpentine re... 27 9.2
>Z73426-7|CAB60290.1| 338|Caenorhabditis elegans Hypothetical
protein Y24F12A.2 protein.
Length = 338
Score = 139 bits (336), Expect = 1e-33
Identities = 67/127 (52%), Positives = 97/127 (76%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDET 379
LL++ ++S + K+FLFD++SKIYIATDS PV+M YELCCDMIDV +D+S IYG V E
Sbjct: 210 LLDVFNNSSKVTKSFLFDILSKIYIATDSEPVEMSIYELCCDMIDVTLDLSSIYG-VAEN 268
Query: 378 ETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQ 199
+N ++ SSS+I+L + V++LR+VNK LALV I++E+ +K G ID+NF F+ I Q
Sbjct: 269 GSN-YDERSSSVIRLKSEQVMFLRQVNKHLALVFIMKEDGNEKAGFIDHNFGVFKAGIEQ 327
Query: 198 VFELRNK 178
VF+++N+
Sbjct: 328 VFKVKNR 334
>AL110480-3|CAB60328.1| 338|Caenorhabditis elegans Hypothetical
protein Y24F12A.2 protein.
Length = 338
Score = 139 bits (336), Expect = 1e-33
Identities = 67/127 (52%), Positives = 97/127 (76%)
Frame = -2
Query: 558 LLNILISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDISCIYGMVDET 379
LL++ ++S + K+FLFD++SKIYIATDS PV+M YELCCDMIDV +D+S IYG V E
Sbjct: 210 LLDVFNNSSKVTKSFLFDILSKIYIATDSEPVEMSIYELCCDMIDVTLDLSSIYG-VAEN 268
Query: 378 ETNTFNNESSSLIKLNNGTVLYLREVNKFLALVCILREENFQKQGVIDYNFLCFRHAITQ 199
+N ++ SSS+I+L + V++LR+VNK LALV I++E+ +K G ID+NF F+ I Q
Sbjct: 269 GSN-YDERSSSVIRLKSEQVMFLRQVNKHLALVFIMKEDGNEKAGFIDHNFGVFKAGIEQ 327
Query: 198 VFELRNK 178
VF+++N+
Sbjct: 328 VFKVKNR 334
>U21321-5|AAL11111.1| 553|Caenorhabditis elegans Hypothetical
protein ZK177.8b protein.
Length = 553
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 543 ISNSGIEKAFLFDVVSKIYIATDSSPVD 460
I G EK+FLFDVVS Y D +D
Sbjct: 199 IIGCGPEKSFLFDVVSNSYNGHDVDKMD 226
>U21321-4|AAG00049.1| 587|Caenorhabditis elegans Hypothetical
protein ZK177.8a protein.
Length = 587
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 543 ISNSGIEKAFLFDVVSKIYIATDSSPVD 460
I G EK+FLFDVVS Y D +D
Sbjct: 233 IIGCGPEKSFLFDVVSNSYNGHDVDKMD 260
>Z92806-1|CAB07258.1| 802|Caenorhabditis elegans Hypothetical
protein K10G4.1 protein.
Length = 802
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = -3
Query: 311 YERSTNSWHWFAFSGKKISKNK-V*SITISYVSGMLLRKSLNFVINVKVL--ELTEEDRV 141
YER N K++++N+ V S+ IS+++ +L KS N ++ K+ E +EED +
Sbjct: 164 YERYQNGSRVQCDLQKEVARNENVVSLAISHLTVIL--KSHNNMVRFKIYLREDSEEDDI 221
Query: 140 LQMLFQTVLQI 108
+ +FQ ++++
Sbjct: 222 DKKVFQDIVEM 232
>AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical
protein Y47G6A.4 protein.
Length = 627
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 102 QWNLQHRLEQHLEYPIFFCQFQNFDIYYEVQRLA 203
+W LQH L+QH + PI + Q +YY ++ LA
Sbjct: 292 EW-LQHLLKQHPKSPILCDRAQFNFVYYGIKTLA 324
>U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical
protein R02F2.7 protein.
Length = 693
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 438 CDMIDVVIDISCIYGMVDETETNTFNNESSSLIKLNNGTVLYLREVNKFL 289
C +V + CIY + +TF+ S LI + N L L+E+ K L
Sbjct: 280 CQTAEVCMS-PCIYYAMISVLRSTFDLNDSELIFIENLKTLKLKEITKHL 328
>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
protein Y42A5A.1 protein.
Length = 1045
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 18 CNKS--ILNXSIYSISVLSLTEAVNDLKYSQWNLQHRLEQH 134
CNK L +YS ++ T+ D Y +W ++H + +H
Sbjct: 862 CNKIPYYLRPHVYSAAINDGTQEDFDFLYKKWMIEHYMMEH 902
>AF047657-3|AAK18947.2| 326|Caenorhabditis elegans Serpentine
receptor, class h protein272 protein.
Length = 326
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 402 YKIYQLRHQSYHSKAHSFAYLLVNCQWLYKSLILHQIGMPF 524
Y Y + SY+ ++ ++++++C L +LI+ I P+
Sbjct: 254 YFAYSVYFDSYNQAYNNISFIIISCHGLISTLIMLFIHKPY 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,360
Number of Sequences: 27780
Number of extensions: 248940
Number of successful extensions: 721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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