Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P21
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 42 7e-05
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.29
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.50
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.66
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.88
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 28 1.2
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 2.0
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.0
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 2.7
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 3.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.7
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 6.2
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 6.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.2
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 8.2
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 42.3 bits (95), Expect = 7e-05
Identities = 34/130 (26%), Positives = 68/130 (52%)
Frame = -3
Query: 715 LRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTG 536
L K QE E K E ++ E+ +K+Q+ + ++ +E+QKQ+ R K LKK EA
Sbjct: 629 LEAKRQE--EARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKK-QQQEADRE 685
Query: 535 KHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLP 356
K + ++ + E+R+ ++KL + + E+ ++ LEK +E+ + ++A++
Sbjct: 686 KMAREQRLREEEEKRI-LEERKRREKLDKEEEERRRRELLEKESEEKERRL---REAKIA 741
Query: 355 KWFGERPGKK 326
+F K+
Sbjct: 742 AFFAPNQTKE 751
Score = 27.5 bits (58), Expect = 2.0
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Frame = -3
Query: 649 EERQKRQDYDLKE-LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSY 473
EERQ+R+ L E ++ + R + +K + + L + K Q + +R +
Sbjct: 610 EERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQK 669
Query: 472 DDKKKL----FEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKKKGELES 308
+ +KKL E D EK+ ++ + +E+ +++ +L K ER ++ E ES
Sbjct: 670 EREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKES 728
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = -3
Query: 709 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 554
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.50
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = -3
Query: 676 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 524
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
Query: 523 K 521
K
Sbjct: 233 K 233
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -3
Query: 676 KLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYE 497
KLE E+ L+E+Q+R KE + Q+LR K + L E + K ++++ + +
Sbjct: 129 KLEKERIRLQEQQRR--------KEERDQKLREKEEAQRLRQEQILNKERQQLKLNNFFT 180
Query: 496 RRVDTRSYDDKKKLFE--GDLEKLNKDF 419
+ V+ R ++ + + +L + K+F
Sbjct: 181 KGVEKRIAPNENFVADKTDELNEFEKEF 208
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 28.7 bits (61), Expect = 0.88
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 361 VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 468
V+PF R + P A P R P + +GH V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = -3
Query: 682 IVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTG--KHPPKIQVA 509
+ +LE +K + ER K+ + ++ ER+ +QL + +D E K K Q+
Sbjct: 49 MAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMRKCQID 108
Query: 508 SKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLP 356
Y + + L+ + ++ ++W E E+F +K ++P
Sbjct: 109 LMYIKEYPPLT--KYVSLYAEGTSEQTEETRNRIWAEMEERFNSGRKHKIP 157
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = -3
Query: 712 RQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK 533
++K++++ E + K E +L+ + LKE ++QK+ L+ K + D L+ K
Sbjct: 19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEAD---LSQK 75
Query: 532 HPPKIQVASKYERRVDTRSYDD 467
H + Q K + + +D
Sbjct: 76 HATERQKLDKGDEETNETQQED 97
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -3
Query: 673 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 524
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -3
Query: 673 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYER 494
L+ + D+E+ + EL E +Q RH+ L K + K I+ A++ ER
Sbjct: 371 LDVTEIDVEQAFPLLNVPDAELDEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAER 430
Query: 493 -RVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQF 383
D R + + + + +K LEK+ + + +F
Sbjct: 431 AEADERLRLENFSTWVNEKRETHKILLEKISKNKRLKF 468
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 394 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 501
PS+++ S S+SL + +SFC+ + CR+ R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -3
Query: 577 KALKKGLDPEALTGKHPPKI---QVASKYERRVDTRSYDDKKKLFEGDLE-KLNKDFLEK 410
KALKK + + K+PP V+ K++R VD + + KL E KL+ L +
Sbjct: 1113 KALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNE 1172
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 382 RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 477
R + P P R P ++ +GH +++C R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 658 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 563
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 688 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 590
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -2
Query: 647 REAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRR 468
R+ KE K A+ +A EA + E R H Q AQ + + A R R
Sbjct: 776 RQRKEI-FEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKERE 834
Query: 467 QKE 459
Q+E
Sbjct: 835 QRE 837
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 616 KELKERQKQQLRHKALKKGLDPEALTG 536
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 478 SYDDKKKLFEGDLEKLNKDFLEK 410
S DKKK+ +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,905
Number of Sequences: 5004
Number of extensions: 27994
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -