Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P18
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0066 - 537729-538163 134 3e-32
10_07_0174 + 13815478-13815903 134 3e-32
03_02_0943 + 12598616-12598789,12599790-12601250 31 0.26
06_01_0889 - 6807449-6809257 30 0.80
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 3.2
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746... 27 4.3
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 27 5.6
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 7.5
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273... 27 7.5
08_01_1057 + 10761508-10761758,10762155-10762267,10762681-107627... 26 9.9
07_01_0358 - 2631214-2632992 26 9.9
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 26 9.9
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 26 9.9
>03_01_0066 - 537729-538163
Length = 144
Score = 134 bits (324), Expect = 3e-32
Identities = 64/106 (60%), Positives = 85/106 (80%)
Frame = -1
Query: 331 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 152
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76
Query: 151 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 14
ERERR ++VP+ SALE D I VD +T DML L ++ G+ + QP
Sbjct: 77 ERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>10_07_0174 + 13815478-13815903
Length = 141
Score = 134 bits (323), Expect = 3e-32
Identities = 62/105 (59%), Positives = 83/105 (79%)
Frame = -1
Query: 331 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 152
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76
Query: 151 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 17
ERERR ++VPE SALE + I VD +T +ML L ++ G++ Q
Sbjct: 77 ERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = -1
Query: 229 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 50
A +++HL+RR+ + K Q EE ++ + + + LEHD+I + +T D+LK L+
Sbjct: 41 AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96
>06_01_0889 - 6807449-6809257
Length = 602
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 199 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 77
LRH Q R I ++ + R R + YVP+ HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 175 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 53
++I++Q + +R + +V A E I DP+TK+++K +
Sbjct: 615 LAIEVQPLDDRKRKGEIVKVYANEQKKITCDPETKELIKKI 655
>03_02_0324 -
7463482-7463601,7463660-7463736,7463827-7463883,
7464154-7464246,7464528-7464654,7464836-7466794
Length = 810
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 193 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 77
H Q + I KL E R R+ Y PEV A HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 77 VGVYFDDVMFESRHFWDIVVTPL 145
V + FDDV E +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 79 DTKDMLKMLDFNNINGLQLTQPATQ 5
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>04_04_0008 +
22125707-22125828,22127122-22127197,22127297-22127367,
22127502-22127995,22128079-22128239,22128329-22128532,
22129292-22129526,22129996-22130591
Length = 652
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 166 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 53
+LQE D + E+ H+I+E + D + ML++L
Sbjct: 543 RLQENRGGVDDYLMEEIRVRSHEILENEEDMQQMLRIL 580
>08_01_1057 +
10761508-10761758,10762155-10762267,10762681-10762733,
10763892-10764248
Length = 257
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/64 (18%), Positives = 36/64 (56%)
Frame = -1
Query: 220 ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN 41
A +L+ + S+++ ++ + EE++++D + + LE D ++ + D+K ++ +
Sbjct: 122 AVYLVAQYARSEIK--RMEAEAEEKKKKDEELEKEKQLEADSVKDETDSKLSAVLVRLDT 179
Query: 40 INGL 29
+ G+
Sbjct: 180 LEGV 183
>07_01_0358 - 2631214-2632992
Length = 592
Score = 26.2 bits (55), Expect = 9.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 244 LRNKIAGFATHLMRRLRHSQVRGISIKLQE-EERERRDNYVPEVSALEHDIIEVDPDT 74
LRN + F +M H + I L E ER RR+ Y+P S + DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 26.2 bits (55), Expect = 9.9
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -1
Query: 241 RNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD-M 65
R + G L+RRL S I + +EEE E +DN EV+ + E+ +++
Sbjct: 109 RLPVKGLKDELVRRLFES----IQSE-KEEEEEEQDNETVEVNPAANQASEIQSVSQETT 163
Query: 64 LKMLDFNNINGLQLTQPAT 8
+ + + + +Q+TQ AT
Sbjct: 164 VSITEVHKETVVQVTQEAT 182
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 15 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADT 119
GC + +K+ +F+I LVS S+++C A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,908,978
Number of Sequences: 37544
Number of extensions: 175061
Number of successful extensions: 481
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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