Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P15
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134...    29   1.9  
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538...    29   2.6  
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    29   2.6  

>03_05_0931 -
           28912700-28913056,28913245-28913319,28913424-28913497,
           28913604-28913691,28913785-28913936,28914050-28914209,
           28914303-28914458,28914566-28914784,28915390-28915650,
           28917183-28917389,28917488-28917619
          Length = 626

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 157 GRSVEPCVPHRARVPLAPKSTLAYSGKS 240
           GR+ EPC   R RV  AP S  + SG S
Sbjct: 534 GRATEPCNMSRKRVDAAPPSVRSSSGSS 561


>05_01_0600 +
           5381879-5381995,5382061-5382216,5382521-5382604,
           5382708-5382833,5383801-5383845,5384423-5384554,
           5384682-5384777,5384880-5385041,5385156-5385300,
           5385753-5385825,5386002-5386062,5386419-5386529,
           5386620-5387093,5387173-5387207,5387760-5388318
          Length = 791

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 463 TKTSVSTVRCIINEAKGSGLLAVFRTPDXKRSG 561
           T TS  ++RC ++    S  +  F+TPD K SG
Sbjct: 502 TSTSTGSLRCKMDLDPASSSMDHFKTPDRKESG 534


>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 206  LPKVRLRTVESLSLLIVKLFVIIACGLCCHCYLLSVC*FFIKHTLCR 346
            +P VR  +V  L  L+++    + C  C +  LLS C   +K T CR
Sbjct: 981  MPGVREVSVPYLKKLVIRNMPNLECCTCANLDLLSSCLEVLKITKCR 1027


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,183
Number of Sequences: 37544
Number of extensions: 269006
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)