Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P15
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132863-8|CAB60576.2| 519|Caenorhabditis elegans Hypothetical ... 30 1.0
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 29 1.7
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 29 1.7
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 28 4.0
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 28 4.0
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 28 4.0
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine re... 27 7.0
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 7.0
>AL132863-8|CAB60576.2| 519|Caenorhabditis elegans Hypothetical
protein Y37H2A.7 protein.
Length = 519
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 301 FVECLLIFYKTYTMP*QTGVVLKRKGRKFVYDVY 402
F+E L +FY Y+ P GV + +G KFV Y
Sbjct: 473 FMEILKVFYPKYSEPLPAGVRFETQGFKFVIGFY 506
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 470 VFVASEVCFNFS--ISFFPCFIMKQYTSYTNFLPFLLSTTPVCHGIVYVL 327
+F V FN+ +SF P F++ QY + F F V ++YVL
Sbjct: 449 LFAGVTVIFNYFMVVSFLPAFLLIQYRHFDCFTGFKFPYRSVLSHLLYVL 498
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 470 VFVASEVCFNFS--ISFFPCFIMKQYTSYTNFLPFLLSTTPVCHGIVYVL 327
+F V FN+ +SF P F++ QY + F F V ++YVL
Sbjct: 449 LFAGVTVIFNYFMVVSFLPAFLLIQYRHFDCFTGFKFPYRSVLSHLLYVL 498
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 167 SNLASRTAPAFRLLPKVRLRTV--ESLSLLIVKLFVIIACGLCCHCYLLS 310
SN+ S TA ++L + T+ E LSL ++ +++ CG CH LL+
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLN 273
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 167 SNLASRTAPAFRLLPKVRLRTV--ESLSLLIVKLFVIIACGLCCHCYLLS 310
SN+ S TA ++L + T+ E LSL ++ +++ CG CH LL+
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLN 273
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 167 SNLASRTAPAFRLLPKVRLRTV--ESLSLLIVKLFVIIACGLCCHCYLLS 310
SN+ S TA ++L + T+ E LSL ++ +++ CG CH LL+
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLN 273
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 539 VRNTASKPEPLASLIMHLTVLTDVFVAS 456
+R S+PE LA L + L VLTD + S
Sbjct: 1129 MRELQSEPEQLAQLYLQLWVLTDAVIKS 1156
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 539 VRNTASKPEPLASLIMHLTVLTDVFVAS 456
+R S+PE LA L + L VLTD + S
Sbjct: 1129 MRELQSEPEQLAQLYLQLWVLTDAVIKS 1156
>AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine
receptor, class sx protein8 protein.
Length = 296
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 509 LASLIMHLTVLTDVFVASEVCFNFSISFFPCFIMKQYTSYTNFLPFL-LSTTPVCH 345
L S I +LTD + + CFN + S C+ ++ + L L L PV H
Sbjct: 57 LNSCIDVYLMLTDSVILRQTCFNITFSTVFCYCVQSTIMFFILLDILILVVFPVAH 112
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 224 ASVLLGASGTRARCGTQGSTDLPITRS 144
AS L A T RC + G +LP+TRS
Sbjct: 6 ASRCLSAGNTAFRCLSTGKDNLPVTRS 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,719
Number of Sequences: 27780
Number of extensions: 247099
Number of successful extensions: 659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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