Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P15
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.70 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 163 SVEPCVPHRARVPLAPKSTLAYS 231
           S+E  V H   VPL  + TL +S
Sbjct: 367 SIEKMVDHETMVPLGERQTLMFS 389


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = -1

Query: 410 MKQYTSYTNFLPFLLSTTPVCHGIVYVL*KINKHST 303
           +K++    +F P   +   +CH +   L  +N H +
Sbjct: 387 LKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKS 422


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 334 MFYKKSTNTQQIAMATKSTSNY 269
           + Y  +    ++ +ATK+T NY
Sbjct: 112 VLYNNADGNFEVTLATKATLNY 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,623
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)