Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P14
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 170 4e-43
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 167 5e-42
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 8e-37
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.1
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.6
05_05_0006 + 21450739-21451434 28 3.4
09_02_0047 - 3528462-3528986,3531432-3531818 28 4.5
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.5
11_04_0350 - 16658497-16659015 27 6.0
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 27 6.0
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.0
03_01_0183 - 1474202-1474276,1474511-1474627,1474791-1474847,147... 27 7.9
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 170 bits (414), Expect = 4e-43
Identities = 79/118 (66%), Positives = 97/118 (82%), Gaps = 1/118 (0%)
Frame = -1
Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 215
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 214 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKK 41
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKK 128
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 167 bits (405), Expect = 5e-42
Identities = 78/118 (66%), Positives = 96/118 (81%), Gaps = 1/118 (0%)
Frame = -1
Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 215
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 214 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKK 41
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKK 128
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect(2) = 8e-37
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = -1
Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 215
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 214 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 128
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 39.9 bits (89), Expect(2) = 8e-37
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -1
Query: 127 HGLYEKKRPTRKQRKERKNRMKKVRGTKK 41
+GL K +RKQ KERKNR KK+RG KK
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRGVKK 156
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 197 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 96
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 231 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 410
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>05_05_0006 + 21450739-21451434
Length = 231
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 16 LGGRTYFSISWYRGPSSFCSYVLYAVCAWASSSRTGRGGLTCAWARTSW 162
LGGR PSS S A A+ S+S TG T ++ SW
Sbjct: 55 LGGRAVSRPKSSAPPSSSASTTTTAAAAFTSTSTTGASATTVDSSKESW 103
>09_02_0047 - 3528462-3528986,3531432-3531818
Length = 303
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 5 SHHFLEAAPTLVFLGTADLLHSVLTF 82
+HH + A ++ +GT+D LH+ L F
Sbjct: 157 AHHIISQALYILSVGTSDFLHNYLVF 182
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 282 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 410
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>11_04_0350 - 16658497-16659015
Length = 172
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -1
Query: 115 EKKRPTRKQRKERKNRMKKVRGTKK 41
+KK+ +K++K++K + KKVR T++
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYTQE 60
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -1
Query: 115 EKKRPTRKQRKERKNRMKKVRGTKK 41
+KK+ +K++K++KN+ KK + KK
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKK 99
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 124 GLYEKKRPTRKQRKERKNRMKK 59
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>03_01_0183 -
1474202-1474276,1474511-1474627,1474791-1474847,
1475149-1475196,1475313-1476101,1476516-1476646,
1476769-1476937,1477954-1478541
Length = 657
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 139 RLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKY*SR 29
R +R G KKRP R++ +++ + + V Y SR
Sbjct: 412 RRSRSGKKGKKRPARRRSQQKTDELSAVESGSNYSSR 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,142
Number of Sequences: 37544
Number of extensions: 287625
Number of successful extensions: 927
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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