Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P13
(612 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 350 2e-95
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 343 3e-93
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 173 3e-87
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 298 6e-80
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 268 7e-71
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 196 6e-69
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 251 9e-66
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 247 1e-64
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 233 2e-60
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 221 1e-56
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 219 6e-56
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 135 9e-31
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 118 1e-25
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 109 5e-23
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 105 6e-22
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 105 1e-21
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 104 2e-21
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 103 3e-21
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 100 2e-20
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 98 2e-19
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 97 2e-19
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 95 2e-18
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 93 5e-18
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 89 6e-17
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 89 6e-17
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 89 8e-17
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 89 1e-16
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 85 1e-15
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 84 2e-15
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 84 3e-15
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 71 2e-11
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 70 5e-11
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 67 3e-10
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 66 6e-10
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.062
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.19
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.1
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 5.3
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 9.3
UniRef50_Q9Y8V1 Cluster: Putative uncharacterized protein; n=1; ... 32 9.3
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 9.3
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 350 bits (860), Expect = 2e-95
Identities = 159/201 (79%), Positives = 177/201 (88%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
GV+APRPSTGPHKLRE LP +IFLRNR KYAL G EV KIV QRL+KVDGKVRTDPTYPA
Sbjct: 25 GVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPA 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
G+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDG
Sbjct: 85 GYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGS
Sbjct: 145 RTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
FDIVHIKDS GH ATRL NV
Sbjct: 205 FDIVHIKDSQGHVFATRLTNV 225
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 343 bits (842), Expect = 3e-93
Identities = 150/201 (74%), Positives = 177/201 (88%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
GV+APRPSTGPHKLRECLP +IFLRNR KYALTG+EV KI QR IK+DGKVRTD TYPA
Sbjct: 25 GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPA 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD
Sbjct: 85 GFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDA 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G I +RERHPGS
Sbjct: 145 RTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
FD+VH+KD+ G++ ATRL+N+
Sbjct: 205 FDVVHVKDANGNSFATRLSNI 225
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 173 bits (422), Expect(2) = 3e-87
Identities = 71/106 (66%), Positives = 93/106 (87%)
Frame = -3
Query: 322 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 143
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 142 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTXATRLNNV 5
+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++ ATRL+N+
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNI 257
Score = 171 bits (415), Expect(2) = 3e-87
Identities = 78/96 (81%), Positives = 85/96 (88%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
GV+APRPSTGPHKLRECLP +IFLRNR KYALTG+EV KI QR IK+DGKVRTD TYP
Sbjct: 25 GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPT 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 320
GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 85 GFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 298 bits (732), Expect = 6e-80
Identities = 135/201 (67%), Positives = 163/201 (81%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +AP+PS+GPHK RECLP V+ +RNR KYALT EV+ I+ QR I+VDGKVRTD TYPA
Sbjct: 25 GAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPA 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DG
Sbjct: 85 GFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG I +RE+H GS
Sbjct: 145 RTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+ +HI+DSTGH ATRL NV
Sbjct: 205 FETIHIQDSTGHEFATRLGNV 225
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 268 bits (657), Expect = 7e-71
Identities = 118/201 (58%), Positives = 153/201 (76%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +AP+PS GPH ++ECLP ++ LRNR YAL G EV IVK R IK+DGK+RTD YP
Sbjct: 25 GTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPV 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDG
Sbjct: 85 GFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +GRVG IV RE HPGS
Sbjct: 145 RTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+IVHIKD+ G+T TRLNNV
Sbjct: 205 FEIVHIKDAKGNTFTTRLNNV 225
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 196 bits (479), Expect(2) = 6e-69
Identities = 82/122 (67%), Positives = 104/122 (85%)
Frame = -3
Query: 370 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 191
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 190 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTXATRLN 11
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++ ATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 10 NV 5
N+
Sbjct: 196 NI 197
Score = 87.4 bits (207), Expect(2) = 6e-69
Identities = 39/51 (76%), Positives = 43/51 (84%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGK 455
GV+AP PSTGPHKLRECLP +IFLRNR KYALTG+EV KI Q IK+DGK
Sbjct: 25 GVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDGK 75
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 251 bits (615), Expect = 9e-66
Identities = 117/193 (60%), Positives = 146/193 (75%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
GV+A RPSTGPHKLRECLP IFLRNR KYALTG+EV KI Q IKVDGK+RTD P
Sbjct: 36 GVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPY 94
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD
Sbjct: 95 WIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDI 154
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG N GR+G I +RERHP S
Sbjct: 155 HTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVITNRERHPVS 213
Query: 67 FDIVHIKDSTGHT 29
FD H+KD+ ++
Sbjct: 214 FDTFHVKDANSNS 226
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 247 bits (605), Expect = 1e-64
Identities = 112/201 (55%), Positives = 149/201 (74%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +A PSTGPHKLRECLP IFLR+R KYALT E + IVK+RL+KVDGKVRT+ YP
Sbjct: 39 GKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPT 98
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDG
Sbjct: 99 GLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDG 158
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GRVGTI E+ S
Sbjct: 159 RTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMAS 218
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
FDIVH+KD++G ATR+ NV
Sbjct: 219 FDIVHLKDTSGAVFATRIMNV 239
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 233 bits (570), Expect = 2e-60
Identities = 108/200 (54%), Positives = 139/200 (69%), Gaps = 2/200 (1%)
Frame = -3
Query: 598 APRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 425
A RPS GPHKLRE LP + L+ R YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 424 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 245
MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 244 TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF 65
TIR+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSF
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSF 317
Query: 64 DIVHIKDSTGHTXATRLNNV 5
DI H+KD+ G+ ATRL N+
Sbjct: 318 DICHVKDAKGNAFATRLGNI 337
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 221 bits (539), Expect = 1e-56
Identities = 101/201 (50%), Positives = 141/201 (70%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G++APR S+GPHK + +P VI +RN+ KY+ E L I+K+ I VDGKVR D +PA
Sbjct: 25 GIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPA 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
G MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDG
Sbjct: 85 GVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G ++ GS
Sbjct: 145 RTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
IV +KD G + +T+ N+
Sbjct: 205 DSIVCLKDFNGSSFSTQTKNL 225
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 219 bits (534), Expect = 6e-56
Identities = 103/201 (51%), Positives = 131/201 (65%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
GV+APRP GPHKLRECLP ++ +RNR KYAL E I++Q L+ VD R D YPA
Sbjct: 22 GVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPA 81
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG
Sbjct: 82 GFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDG 141
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
IRYPDP + D+I ++ K +D IK G ++TGG N GR+G IV E HPG+
Sbjct: 142 HRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGA 201
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+I H+KD++G ATR N+
Sbjct: 202 FNIAHLKDASGAEFATRAANI 222
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 135 bits (326), Expect = 9e-31
Identities = 69/193 (35%), Positives = 116/193 (60%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +A P++GPHK EC+P + +YA E+ I+ ++ IKV+G+VRT+ +P
Sbjct: 25 GTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPV 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 85 GLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCG 143
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
+IR+ DP I + +I++ T+K++++I + ++ G+ GRVG +++ G
Sbjct: 144 LSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVG-VINTISTQGK 202
Query: 67 FDIVHIKDSTGHT 29
+ + D G+T
Sbjct: 203 ETVYGMTDFAGNT 215
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 118 bits (283), Expect = 1e-25
Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 10/209 (4%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
+A +P GPH + LP ++ +RN YA T E K++ + +VDG VR D +P GF
Sbjct: 28 WAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGF 87
Query: 421 MDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 245
MDV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
Query: 244 TI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS 89
I R DP + + D++ + + +I IKF G + +I GGRN+GRVG + S
Sbjct: 147 NILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKS 206
Query: 88 RERHPG-SFDIVHIKDSTGHTXATRLNNV 5
++ G +V ++D++G+ T L+ V
Sbjct: 207 VQKGWGRKRTLVTLEDASGNLFQTSLDYV 235
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 109 bits (262), Expect = 5e-23
Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 9/209 (4%)
Frame = -3
Query: 604 VYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAG 425
V+ +PS GPH L +P I LR+ YA T E +I+ R+I+VDG+V TD +P G
Sbjct: 29 VWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVG 88
Query: 424 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 245
MDV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 244 TI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI-V 92
+ Y + K D++ + I I+ + FE G L ++ GRN+G +G I
Sbjct: 149 NVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRINA 208
Query: 91 SRERHPGSFDIVHIKDSTGHTXATRLNNV 5
++ S +V ++D++G T L V
Sbjct: 209 IQQVFKRSRALVELEDASGAKSRTILQYV 237
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 105 bits (253), Expect = 6e-22
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 1/187 (0%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
+ P P+ G H + + + +R+ K + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 421 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 242
MDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 83 MDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 241 IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SF 65
D KV D + + KI + IK + GN IT G ++ + GTI E G S
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSA 200
Query: 64 DIVHIKD 44
++VH ++
Sbjct: 201 NLVHFQE 207
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 105 bits (251), Expect = 1e-21
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 15/211 (7%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +APRP GPH + +P +I +R+ YA E KI+ + I VDG VR +P +P
Sbjct: 29 GKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPV 88
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
G MDVV I +T + +R++ + R + I+ EEA+ K+C++K + HDG
Sbjct: 89 GIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDG 148
Query: 247 RT--IRYPDP------LIKVNDSIQLDI------ATTKIMDFIKFESGNLCMITGGRNLG 110
+ + DP + V DS+ L++ + K++D I FE G GR+ G
Sbjct: 149 KNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSG 208
Query: 109 RVGTIVSRERHPG-SFDIVHIKDSTGHTXAT 20
VG +V + G D++ +++ G T
Sbjct: 209 EVGRVVEIQTFEGPQEDLITVENPEGDQFQT 239
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 104 bits (249), Expect = 2e-21
Identities = 53/166 (31%), Positives = 88/166 (53%)
Frame = -3
Query: 592 RPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 413
+PS G H + L + +R+ K A E +I+ + VDG+V D +P GFMD+
Sbjct: 31 KPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDI 90
Query: 412 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 233
+ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 91 IEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVII 148
Query: 232 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 95
+ V D I L + +I + + + G +ITGG++ G +GT+
Sbjct: 149 DENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 103 bits (247), Expect = 3e-21
Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
+ RPS GPH + + LP ++ +R+ KYA E KI++ I +DG R + +PAG
Sbjct: 28 FTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGL 87
Query: 421 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDG 248
MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDG
Sbjct: 88 MDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QLNLHDG 143
Query: 247 R--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 92
R + + + K DS+ + I I + F G L ITGG+++G IV
Sbjct: 144 RNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIV 203
Query: 91 SRERHPGSFDIVHIKDSTGHTXAT 20
E DIV +++ G T
Sbjct: 204 EVENRALYSDIVTLENKDGEKFKT 227
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 100 bits (240), Expect = 2e-20
Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
GV+ RPS GPH L LP + +R+ KYA T +E I+ + +KVDG VR D +P
Sbjct: 21 GVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPV 80
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
G MDV+ I T E++R++ D + + I+ EEA KL +V+ L HDG
Sbjct: 81 GLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDG 140
Query: 247 R---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 95
R T IK DS+ D+ I I + G ++ G N+G GT+
Sbjct: 141 RNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 97.9 bits (233), Expect = 2e-19
Identities = 50/191 (26%), Positives = 93/191 (48%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G++ + S+GPH + + + ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D
Sbjct: 85 SLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDL 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
R ++ IKV DS+ + +I+ +KFE G+LC+IT G++LG + I +
Sbjct: 145 RELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSL 204
Query: 67 FDIVHIKDSTG 35
++H++ G
Sbjct: 205 RKMIHLEKIDG 215
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 97.5 bits (232), Expect = 2e-19
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 1/170 (0%)
Frame = -3
Query: 589 PSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 410
P+ H + +P +I LR+ K E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 409 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 233
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 232 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 83
I +D + + I +I + +K G+ ITGG ++G + TI S E
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATIKSIE 196
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 94.7 bits (225), Expect = 2e-18
Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 3/171 (1%)
Frame = -3
Query: 592 RPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 413
+PS GPH +P + LR+ YA T E I+ + +KVDGKVR D YP G MDV
Sbjct: 25 KPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDV 84
Query: 412 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-- 239
+ + NE +R+I D RI EA K+C+++ L HDGR I
Sbjct: 85 IELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIV 144
Query: 238 -RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS 89
+ + S+ +++ K+MD+ + + G N+GR GT+++
Sbjct: 145 DQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLIN 195
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 93.1 bits (221), Expect = 5e-18
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 8/204 (3%)
Frame = -3
Query: 592 RPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 413
R GPHK++E +P I L+ K T E +I+ + VDGKVR D YP G MDV
Sbjct: 25 RSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDV 84
Query: 412 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 233
V I + R+I D T I+ E+AKYK ++ T V L DGR I
Sbjct: 85 VEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILL 144
Query: 232 P-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI--VSRERHP 74
+ L + N ++++++ KI + G MI GGRN G G I + ++
Sbjct: 145 KGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYK 204
Query: 73 G-SFDIVHIKDSTGHTXATRLNNV 5
+ +V ++ G T T L NV
Sbjct: 205 RIKYSLVTLEGKDGSTFQTNLINV 228
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 89.4 bits (212), Expect = 6e-17
Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 7/201 (3%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
+ + + GPH LP ++LR A +EV KI+ QR + V+G+ D G
Sbjct: 23 FVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGV 81
Query: 421 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 242
D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 82 FDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGAN 141
Query: 241 IRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIVSRERH 77
+ D K DS+ + + T +I+D + GN+ MI GG++ G+VG IV R
Sbjct: 142 V-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIVEIIRT 200
Query: 76 PGSF--DIVHIKDSTGHTXAT 20
S ++ DS G T
Sbjct: 201 ASSVPNHVILTDDSAGERFET 221
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 89.4 bits (212), Expect = 6e-17
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 1/182 (0%)
Frame = -3
Query: 580 GPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 401
GPH LP + +R+ K E +I+ + + VDG R D +P G DV+++
Sbjct: 29 GPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLP 88
Query: 400 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 221
NE +R++ D KGR ++++ E KLC++ T L +DG I +
Sbjct: 89 LVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSND- 146
Query: 220 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKD 44
DS+ L I ++ +KFE GNL M+ GG++ G G I+ RE + V I
Sbjct: 147 YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISG 206
Query: 43 ST 38
T
Sbjct: 207 ET 208
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 89.0 bits (211), Expect = 8e-17
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 1/172 (0%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G + +PS GPH +P ++LR+ A EV ++ + VDG+ D +P
Sbjct: 26 GYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPV 85
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHD 251
G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +T D
Sbjct: 86 GLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-D 144
Query: 250 GRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 95
GRT D K + + +I KI + I E I G++ GR+G I
Sbjct: 145 GRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 88.6 bits (210), Expect = 1e-16
Identities = 51/169 (30%), Positives = 82/169 (48%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
+ +P G H +P V+ LR+ K A +E+ KI+ + + VDGKVR D Y G
Sbjct: 24 WVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGM 83
Query: 421 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 242
D +SI N +R++ + G+F H + +A K+CK+ L HDG T
Sbjct: 84 FDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTT 141
Query: 241 IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 95
+ + K DS+ L + KI + G+L M+T G++ G +G +
Sbjct: 142 MIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 85.0 bits (201), Expect = 1e-15
Identities = 48/162 (29%), Positives = 81/162 (50%)
Frame = -3
Query: 580 GPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 401
GPH + +P + LR+ E +++ + + VDG R D +P G MD+++I
Sbjct: 30 GPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIITIP 89
Query: 400 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 221
N +R++ D K R ++++ A KLC+++ + + + +DG I
Sbjct: 90 LNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNI-IGSNN 147
Query: 220 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 95
DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 148 YNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 84.2 bits (199), Expect = 2e-15
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Frame = -3
Query: 604 VYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAG 425
++ +P+ G H C+P + LR+ A E +++ R + VDG++ TD G
Sbjct: 23 IWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVLVDGRIETDLGRGVG 82
Query: 424 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 245
MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 244 TIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 83
I D L D++ + + + F G +TGG ++G +VSR+
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGITAKVVSRD 195
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 83.8 bits (198), Expect = 3e-15
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 1/180 (0%)
Frame = -3
Query: 580 GPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 401
G HK +P +I LR+ K E+ +I+ L+ VDGKV + GFMD +++
Sbjct: 30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVS 89
Query: 400 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 221
+ L + YD KG+ I E KL +VK + HDG T+
Sbjct: 90 GNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKD 147
Query: 220 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKD 44
IK DS+ + I +I+D +KF GN ITGG ++G + TI S E + ++VH+ +
Sbjct: 148 IKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNE 207
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 71.3 bits (167), Expect = 2e-11
Identities = 44/162 (27%), Positives = 71/162 (43%)
Frame = -3
Query: 580 GPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 401
G H +P + LR+ T E K + ++VDG RT + G MDVV +
Sbjct: 35 GAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELG 94
Query: 400 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 221
T +++R++ +I E K+C+V + + HDGR++ D
Sbjct: 95 GTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSKTSISGGRTQIGFHDGRSL-ISDEK 153
Query: 220 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 95
+ V DS + + KI+ + E G ++T G N G GTI
Sbjct: 154 VSVGDSCLVQVPGQKILKVARMEKGAHAVVTRGTNAGSTGTI 195
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 69.7 bits (163), Expect = 5e-11
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 4/198 (2%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
Y S+GPH LP I+LR+ ++AL EV KI+ R + ++G + TD
Sbjct: 22 YVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDV 80
Query: 421 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 242
D++S K ++ + ++ D KGR + I+ + AK +L KV T + G
Sbjct: 81 FDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTTIKGGKTQINLTSGAN 140
Query: 241 IRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG 71
+ K DS+ + IA + + GN+ +I GG++ + G +V
Sbjct: 141 F-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGGQHTMKTGKLVEILVQES 199
Query: 70 SF-DIVHIKDSTGHTXAT 20
S + V I+D+ G+ T
Sbjct: 200 SLPNRVIIEDADGNKFET 217
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 67.3 bits (157), Expect = 3e-10
Identities = 43/138 (31%), Positives = 70/138 (50%)
Frame = +2
Query: 5 HVVQPRGXGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 184
HV + R ++ GVL VHN EG + LA D V + DH Q ++LD + +L
Sbjct: 56 HVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGDLVR 115
Query: 185 CNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESAL 364
+V +G+ D + + +GAA+++ R+ L QLVL D V ES+L
Sbjct: 116 RDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSL 175
Query: 365 NIID*TKQFISLLN*DNI 418
++D + FI+L + D++
Sbjct: 176 GVVDEPEVFIALFDGDDV 193
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 66.1 bits (154), Expect = 6e-10
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = -3
Query: 601 YAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 422
+ + GPH +P +I LR+ YA E + + + ++GK +D P G
Sbjct: 23 FTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGM 81
Query: 421 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 242
D+++ + E +R+ GR + I P+ A+ KL K+ L HDG T
Sbjct: 82 FDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGET 141
Query: 241 -IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
I D DSI + +++ ++E G L G + G VG + + PGS
Sbjct: 142 LIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 39.5 bits (88), Expect = 0.062
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = -3
Query: 502 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 359
E L I KQ+ +KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 126 EELDINKQQKVKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.9 bits (84), Expect = 0.19
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 386 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILXTIPQENHXGQALA 565
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 566 QLV 574
Q +
Sbjct: 110 QFI 112
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 1.8
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = +3
Query: 120 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 299
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 300 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 428
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.9 bits (74), Expect = 3.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -2
Query: 221 YQSQRFHPVRHCNYEDYGLHQV*VRELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQ 48
+ + + HP+R Y G+ V++LV DH R A HR R RL + H+
Sbjct: 31 FHAFKIHPLRIA-YRT-GIDVTLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHK 88
Query: 47 GLHGTHLXHEVEQ 9
G+ L H++EQ
Sbjct: 89 GIAQAELQHKIEQ 101
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 5.3
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 265 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 131
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 9.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 197 LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 334
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_Q9Y8V1 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 688
Score = 32.3 bits (70), Expect = 9.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 32 VSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEVHNL 178
+++G++D+ G G G HTP+V A + T PG +H L
Sbjct: 507 LAKGMIDLLWSPGGGYFRLSPPGPHTPEVPAEAEDTAYPGAYATAIHAL 555
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 32.3 bits (70), Expect = 9.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 439 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 293
+YPA + D I + E+FRL+ + + RI + K C ++RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,875,911
Number of Sequences: 1657284
Number of extensions: 13618249
Number of successful extensions: 37863
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 36401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37832
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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