Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P13
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 315 4e-87
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 314 9e-87
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 313 1e-86
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 0.70
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.8
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 2.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.8
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 4.9
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 6.5
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.5
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 6.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 315 bits (773), Expect = 4e-87
Identities = 142/201 (70%), Positives = 166/201 (82%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G YAP+PS GPHK RECLP ++FLRNR KYAL G EV I+ QRLIKVDGKVRTD T+P
Sbjct: 25 GTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPT 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+I+H+KD+ ATRL+NV
Sbjct: 205 FEIIHVKDALDREFATRLSNV 225
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 314 bits (770), Expect = 9e-87
Identities = 141/201 (70%), Positives = 166/201 (82%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G YAP+PS GPHK RECLP ++FLRNR KYAL G EV I+ QRLIKVDGKVRTD T+P
Sbjct: 25 GTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPT 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+I+H+KD+ ATRL+NV
Sbjct: 205 FEIIHVKDALDREFATRLSNV 225
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 313 bits (769), Expect = 1e-86
Identities = 141/201 (70%), Positives = 166/201 (82%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G YAP+PS GPHK RECLP ++FLRNR KYAL G EV I+ QRLI+VDGKVRTD T+P
Sbjct: 25 GTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPT 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GS
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+I+H+KD+ ATRL+NV
Sbjct: 205 FEIIHVKDALDREFATRLSNV 225
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 425 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILXTIPQENHXGQALAQLVGT 580
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -3
Query: 484 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 305
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 304 VK-RVATGPKNVPYLVTHDGR 245
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 218 QSQRFHPVRHCNYED 174
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 160 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 56
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 418 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 242
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 241 IR 236
++
Sbjct: 1778 LK 1779
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 47 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD 163
LD+H V S+ D A T + AS DH VPG K +
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFE 208
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 565 RECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKV 464
+ECLP F Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSFQNKLDFYFLFSDRVLQLQKERKVLV 85
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 21 VAQVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 164
V + P ES M + K+ L T P RP L+P + + P S L+
Sbjct: 414 VRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 323 SLLRGDTVDCESALNIID*TKQ 388
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,979
Number of Sequences: 5004
Number of extensions: 54662
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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