Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P13
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 294 4e-80
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 289 2e-78
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 287 4e-78
11_06_0087 - 19919224-19922304 29 2.2
04_03_1015 - 21734381-21736534 29 2.2
02_05_0202 + 26708049-26709074 28 5.1
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.1
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 6.7
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 27 8.9
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 27 8.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 8.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 294 bits (721), Expect = 4e-80
Identities = 130/201 (64%), Positives = 161/201 (80%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +AP+PS+GPHK RECLP ++ LRNR KYALT EV+ I+ QR + VDGKVRTD TYPA
Sbjct: 41 GAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPA 100
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DG
Sbjct: 101 GFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDG 160
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I SRE+H GS
Sbjct: 161 RTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKGS 220
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+ +H++D+ GH ATR+ NV
Sbjct: 221 FETIHVEDALGHQFATRMGNV 241
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 289 bits (708), Expect = 2e-78
Identities = 126/201 (62%), Positives = 160/201 (79%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +AP+PS+GPHK RECLP ++ +RNR KYALT EV+ I+ QR + VDGKVRTD TYPA
Sbjct: 25 GAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPA 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DG
Sbjct: 85 GFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I +RE+H GS
Sbjct: 145 RTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+ +H++D+ GH ATRL NV
Sbjct: 205 FETIHVEDALGHAFATRLGNV 225
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 287 bits (705), Expect = 4e-78
Identities = 125/201 (62%), Positives = 160/201 (79%)
Frame = -3
Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
G +AP+PS+GPHK RECLP ++ +RNR KYALT EV+ I+ QR + VDGKVRTD TYPA
Sbjct: 25 GAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPA 84
Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
GFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DG
Sbjct: 85 GFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDG 144
Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
RTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I +RE+H GS
Sbjct: 145 RTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGS 204
Query: 67 FDIVHIKDSTGHTXATRLNNV 5
F+ +H++D+ GH ATRL NV
Sbjct: 205 FETIHVEDALGHQFATRLGNV 225
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 285 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 172
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -1
Query: 321 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 196
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>02_05_0202 + 26708049-26709074
Length = 341
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 56 HNVEGAGMSLAGHDGAHTPQVTASRDHTQVPG 151
+ V +G +L GH +H A+ H Q PG
Sbjct: 268 YRVFASGQALGGHKKSHVCSAAAAAAHAQTPG 299
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 385 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 281
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 259 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 125
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 3 HTLFNLVAQVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 122
+ +F L V L+CT+ GC + +VP P++R
Sbjct: 214 NAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 28 RCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 120
RC+P S A +CR+SR S+ W P+ S+
Sbjct: 424 RCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 416 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 511
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,190,061
Number of Sequences: 37544
Number of extensions: 391390
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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