Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P13
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   272   1e-73
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   2.6  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   4.6  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  272 bits (668), Expect = 1e-73
 Identities = 127/201 (63%), Positives = 154/201 (76%)
 Frame = -3

Query: 607 GVYAPRPSTGPHKLRECLPXVIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
           GV+A RP+ GPHKLRE LP  +FLRNR KYAL   E  KI+ QR+++VDGKVRT   +P 
Sbjct: 24  GVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPT 83

Query: 427 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 248
           GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DG
Sbjct: 84  GFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDG 143

Query: 247 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 68
           RTIRYPDP +KVND+I  +I+T KI D +KFE GNL  +TGGRN+GRVG I  RER PG+
Sbjct: 144 RTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGA 203

Query: 67  FDIVHIKDSTGHTXATRLNNV 5
            DI+HIKDS GH+ ATR++NV
Sbjct: 204 SDIIHIKDSAGHSFATRISNV 224


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -3

Query: 361 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 230
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 143 LVYDHGRP*LGACGHHRVPRETSRLLRH 60
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 143 LVYDHGRP*LGACGHHRVPRETSRLLRH 60
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 204  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 368
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
 Frame = -2

Query: 245 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 69
           HH  +   +  +  H P  H ++ ++G H          HG     A  HH    E    
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGSHHSPA--HHGHHGEHHHA 512

Query: 68  LRHCAHQGLHGTHLXHEVE 12
             H  H G HGTH  H  E
Sbjct: 513 PAHHGHHGEHGTHHGHHGE 531



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 131 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 30
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 245 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 162
           HH    PTY    F+P  H +Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,298
Number of Sequences: 27780
Number of extensions: 317860
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)