Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P13
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.083
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.083
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 323 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 439
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 212 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 391
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 392 ISL 400
           +SL
Sbjct: 112 LSL 114


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 547 VIFLRNRXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 368
           V +L +  +   T +++    + R+ ++   VRT    P GF D+V  +K  E   L   
Sbjct: 721 VSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMP 779

Query: 367 VKGRF 353
           +  R+
Sbjct: 780 IPNRY 784


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 50  DVHNVEGAGMSLAGHD 97
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 529 RXKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 428
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 487 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 368
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 232 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 110
           PD L  +     LD+   +I +F      NL  +TG R +G
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,674
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)