Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P11
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 63 4e-11
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 38 0.002
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 29 0.57
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 29 0.76
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 1.00
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 3.0
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c... 27 3.0
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 7.0
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 25 9.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.3
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 63.3 bits (147), Expect = 4e-11
Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 4/219 (1%)
Frame = -3
Query: 740 GIVGIERSIEXQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDT 561
GI +E+S E Q +++ AFQDL AK+ +SL+ + K+ G D
Sbjct: 221 GIHDLEQSHEMQLAKNGRTLVHAFQDLDAFFSLAKDTMSLADQFAEKMDGLTGTQQSDKV 280
Query: 560 VRFKSYLMSLGI--DDPVTRDAFRSDSEYY-LGLAQQVSDMMVAVLLECGGIMSLADVWC 390
+ + LG+ + + ++S Y + L + +S+++ L +++ W
Sbjct: 281 QQLLNKSNQLGVLRGNHLDNVPVSANSRLYDIELCKSISEVLRTRLKADTDTVTMTQAWA 340
Query: 389 RVNRARGLELVSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQL-NSNRDEEIAKSTSDM 213
NR+R L+ P + AC+L+ +++ ++ K SG + QL SN ++ + ++
Sbjct: 341 IYNRSRKANLIPPTRFVKACELIDSMEVGITTSKMNSGLILFQLKTSNHSGKLLSAILEV 400
Query: 212 IQENGYLTPEKLSQIANVSXLLARERLFTTERLGLACRD 96
+ N T K + + S + ERL+ E G RD
Sbjct: 401 M--NPSTTALKCAMRLHWSIGVTLERLYQAEMDGYIVRD 437
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 37.5 bits (83), Expect = 0.002
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Frame = -3
Query: 647 EKAKEMVSLSKNISTKIREKQGDISEDDTVR--FKSYLMSLGIDDPVTRD-----AFRSD 489
E A ++ + + + T RE +I ++ R F + +G+D V+ A
Sbjct: 33 EIASQLSTFQEALKTFAREHATEIKQNSQFRNTFVKLALKIGLDPFVSGSDESAWAAVGM 92
Query: 488 SEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRV----NRARGLELVSPEDLLNACKLL 321
+E+Y +A +V ++ A +E GG++S++ V CR N A G E + D++ A L
Sbjct: 93 NEFYYQVAVRVIEVCYATQMENGGLLSVSQV-CRFLNEENEAFGHEWLRETDVVRAVDSL 151
Query: 320 RTVDAPMSLRKFPSGACV--LQLNSNRDEEIAKSTSDMIQENGYLT 189
+ L K + L L N D+ + +++ GY+T
Sbjct: 152 APLGPGFVLEKIAGKQYIRSLPLELNTDQNVVLEAVEIL---GYVT 194
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 328 LQAFNKSSGDTSSKP-LARFTLHHTSAKDIIPPHSNNTATIISDTCCARPK*YSESDLNA 504
L+A N S D+ K L + ++HH KD++ + A + C P L A
Sbjct: 117 LKALNSSQNDSEVKDKLEKLSIHHPLKKDLLAFIQLDIAAEVVTACINAPDSVLVDILAA 176
Query: 505 SLVTGS 522
S++ G+
Sbjct: 177 SIIAGA 182
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 209 QENGYLTPEKLSQIANVSXLLARERLFTTERLGLACRDESIEGLAFDPNK 60
++NGY+ P+K I + E E LG +D+ GL F+P K
Sbjct: 787 KKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKK-KDKYKGGLVFEPQK 835
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.00
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = -3
Query: 665 DLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMSLGIDDPVTRDAFRSDS 486
D L E + K +S EK GD+S D+++ KSY P+ R
Sbjct: 917 DNNSLEEVLPIFPGVRKLVSNSQSEKIGDLSNDNSMGAKSY------KTPIISSTQRPQG 970
Query: 485 EYYLGLAQQVSDMMVAVLLECGGI 414
+ GL Q S ++ ++ G I
Sbjct: 971 RKFRGLMNQSSKADISRTVDAGSI 994
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.3
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 2/144 (1%)
Frame = +1
Query: 7 TSANKTIXKIFLRPLTKILLGSKAKPSIDSSRHAKPXXXXXXXXXXANKXDTFAICDSF- 183
TS++ I P+T +L S + P+ SS + ++ TF+ S
Sbjct: 521 TSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSIL 580
Query: 184 -SGVRYPFSCIISLVDLAISSSLLLFSCKTQAPLGNFRSDMGASTVRSNLQAFNKSSGDT 360
S P S +S+ + SS+ S T +P S +ST+ S+ S +
Sbjct: 581 SSSTSSPSSTSLSISSSSTSST--FSSASTSSPSSISSSISSSSTILSSPTPSTSSLMIS 638
Query: 361 SSKPLARFTLHHTSAKDIIPPHSN 432
SS ++ + +S+ IP S+
Sbjct: 639 SSSIISGSSSILSSSISTIPISSS 662
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 334 AFNKSSGDTSSKPLARFT--LHHTSAKDIIPPHSNNTA 441
+F+ + S++P AR L H S +D+ P+ NNT+
Sbjct: 969 SFSSKASRLSARPSARTVPPLQHISIQDLREPNENNTS 1006
>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 566 DTVRFKSYLMSLGIDDPVTRDAFRSDSEYYLGLAQQVSDMMV 441
+++RF L GIDD + R S Y + +++SD V
Sbjct: 42 NSLRFVRVLQEAGIDDKKSETLMRLISNVYSDMHEKISDFSV 83
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -3
Query: 416 IMSLADVWCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRKFPSG--ACVLQLNSNRD 243
+ +L+ V N + L + PE + N C LLR + RK + L L+ N
Sbjct: 141 LSTLSSVNQNFNSRQLLATIVPESIQNGCSLLRITKKKVRQRKVSLDPISGYLMLDKNTG 200
Query: 242 EEIAKSTSDMIQE 204
+ K D I+E
Sbjct: 201 KAYKKLCVDDIKE 213
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 257 NSNRDEEIAKSTSDMIQENGYLTPEKLSQI 168
+ NRD EIA+ + D+ + P+ L QI
Sbjct: 163 SENRDREIARISQDVYTMSTITLPQSLEQI 192
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 671 FQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDDTVRFKSYLMSL 531
FQ ++K K +V L + E+ GD+S+D+ +YL+S+
Sbjct: 1111 FQPISK--PKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSM 1155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,551
Number of Sequences: 5004
Number of extensions: 65656
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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