Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P11
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1109 - 34576866-34577043,34577774-34577845,34577934-345780... 114 9e-26
11_03_0195 + 11482228-11483067,11485215-11485415 32 0.45
01_06_1650 - 38904543-38904662,38904940-38905014,38905100-389051... 32 0.59
06_02_0105 - 11893666-11895483,11895661-11896422 29 3.2
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843... 29 4.2
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 29 5.5
07_01_0655 - 4910497-4911972,4912035-4912415 28 7.3
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 28 7.3
03_06_0342 + 33268971-33270533 28 7.3
01_05_0650 + 23925913-23926025,23926128-23926388,23927431-239274... 28 7.3
>01_06_1109 -
34576866-34577043,34577774-34577845,34577934-34578079,
34578337-34578406,34578516-34578573,34578658-34578751,
34579264-34579347,34579958-34580341
Length = 361
Score = 114 bits (274), Expect = 9e-26
Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 4/172 (2%)
Frame = -3
Query: 575 SEDDTVRFKSYLMSLGIDDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLECGGIMSLADV 396
S + V +L+S+GI PVT++ + + Y+ L++Q++D + L + GG+M+L DV
Sbjct: 120 SRSEVVAVVDWLLSVGIVSPVTKET--AGALYHQQLSRQLADYIRTPLEKAGGMMALVDV 177
Query: 395 WCRVNRARGLELVSPEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRDEEIAKSTSD 216
+C NRARG EL+SPEDLL AC L D P+ LRKF SG V+Q ++ D+E+ S
Sbjct: 178 YCLYNRARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISS 237
Query: 215 MIQENGYL----TPEKLSQIANVSXLLARERLFTTERLGLACRDESIEGLAF 72
+ Q+ L +P + ++ LA+E L E +G+ D S +GL F
Sbjct: 238 LAQKEDALQKGISPSDAAFTLGIAPALAKEHLLNAESIGIRW-DVSPDGLRF 288
>11_03_0195 + 11482228-11483067,11485215-11485415
Length = 346
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 194 LTPEKLSQIANVSXLLARERLFTTERLGLACRDESIEGLA 75
L P KL + + LL +FTTER G A E++ GLA
Sbjct: 70 LPPAKLPFLRRLMRLLVSSGVFTTERGGAAAEAEAVYGLA 109
>01_06_1650 -
38904543-38904662,38904940-38905014,38905100-38905164,
38905955-38906037,38906135-38906205,38906385-38906459,
38906702-38906783,38906869-38906933,38907202-38907312,
38907394-38907494,38908514-38908619
Length = 317
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/90 (22%), Positives = 40/90 (44%)
Frame = -3
Query: 749 IRSGIVGIERSIEXQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISE 570
++S + S E + DQ++ DLTK+ + ++++ K + K K + +
Sbjct: 68 VKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY--KAAEQAS 125
Query: 569 DDTVRFKSYLMSLGIDDPVTRDAFRSDSEY 480
DD R + G D+ + R+A + Y
Sbjct: 126 DDWYRRAQLALQKG-DEDLAREALKRRKSY 154
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = -3
Query: 770 VTAVNXKIRSGIVGIERSIEXQHRATDQSISVAFQDLTKLMEKAKEMVSLSKN 612
V A + R+G++G+++ +E + D+S S+A + KL KAKE + +K+
Sbjct: 583 VQAKEKESRNGMLGLQKIMEDTAKEADESKSIAREAQEKL-RKAKEDMDHAKS 634
>02_02_0270 +
8431503-8431830,8431961-8432149,8434288-8434412,
8434527-8434703,8434798-8434871,8434978-8435713
Length = 542
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -3
Query: 353 PEDLLNACKLLRTVDAPMSLRKFPSGACVLQLNSNRD---EEIAKSTSDMIQ-ENGYLTP 186
PED++ + +D P R P+ C L + RD E+A +T D+++ E G T
Sbjct: 175 PEDMVKSSTKKVVIDKPSMARDIPTSLCDLP-QAVRDGIVNEVA-ATKDVVEMEIGSSTA 232
Query: 185 EKLSQIAN 162
EK++ +A+
Sbjct: 233 EKVANMAS 240
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 524 DDPVTRDAFRSDSEYYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRARGLELVSPE 348
D T +AF L ++ D +V E ++ WCRV R+ L++V P+
Sbjct: 744 DAVTTMEAFPQPPTQQLDRHMEIGDGSHSVESEVKQAYDESNKWCRVERSSNLDVVFPQ 802
>07_01_0655 - 4910497-4911972,4912035-4912415
Length = 618
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 160 TFAICDSFSGVRYPFSCIISLVDLAISSSLLLFSC 264
T A+C S + + Y S + V LAI ++L+L SC
Sbjct: 211 TIAVCASSTAIVYVQSSVSWWVGLAIPAALMLASC 245
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 470 LAQQVSDMMVAVLLECGGIMSLADVWCR-VNRARGLELVSPEDLLNACKLL 321
L +++SD ++ ++E G+ V C VNR+ L SPE+LLN K L
Sbjct: 348 LPEELSDNGMSYMVENAGLKD--GVTCSAVNRSEILSCCSPENLLNYVKSL 396
>03_06_0342 + 33268971-33270533
Length = 520
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 701 RATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDISEDD 564
++ D + L K +EKAKE S KN + +++ D +DD
Sbjct: 467 KSLDDNADTCLAALVKELEKAKENKSKGKNAHGEDKDEDEDEEDDD 512
>01_05_0650 +
23925913-23926025,23926128-23926388,23927431-23927449,
23927526-23927745,23927871-23928052,23928158-23928447,
23928621-23928750,23928888-23929235
Length = 520
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -3
Query: 482 YYLGLAQQVSDMMVAVLLECGGIMSLADVWCRVNRAR-GLELVSPEDLLNACKLLRTVDA 306
Y+ G++ S+ +A G M L+ VW +VN+ + V L++ C L ++ +
Sbjct: 350 YFCGMSSVTSNSRMAYAFSRDGAMPLSSVWHKVNKHEVPINAVWLSALISLCMALPSLGS 409
Query: 305 PMSLRKFPSGACV 267
++ + S A +
Sbjct: 410 LVAFQAMVSIATI 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,656,418
Number of Sequences: 37544
Number of extensions: 387387
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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