Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P11
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 416 IMSLADVWCRVNRARGLELVS 354
           IM L +V CR +  RG+ +VS
Sbjct: 706 IMDLDNVMCRTSGPRGVAIVS 726


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -3

Query: 368 LELVSPEDLLNACKLLRTVDAPMSLRKFPSG--ACVLQLNS 252
           L +    D+L + +L      PM LR FP    +C L L S
Sbjct: 142 LRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 496 LNASLVTGSSIPKLMR*DLNLTVSSSEISPCFSLIFVEIFFDKDTI 633
           ++ ++ T +S+P L+      +V SSE+S  +     EI  D D +
Sbjct: 408 VDITVTTDASVPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLV 453


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 302 MSLRKFPSGACVLQLNSNRDEEIAKSTSDMIQENGYLTPEKL 177
           MSL +  SGA  +   ++  +E   STSD I++   +  EK+
Sbjct: 1   MSLGQRISGAVAVLRGTSEVKEAQTSTSDEIEKITTVEEEKI 42


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -2

Query: 201 WIPYTREAIANRKCIXLVGERETIYYGKTWLG 106
           W+P+    + +  C   + + + ++   TWLG
Sbjct: 348 WLPFFVVNLWSGFCSQCIWQEKIVFAAVTWLG 379


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 484 NTIWVLHNKYQI*WLLCYWSV 422
           N  W L     + W+LCY+ +
Sbjct: 171 NIRWELAGTLLLVWILCYFCI 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,701
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)