Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P08
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...   271   4e-73
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431...    31   0.84 
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166...    29   4.5  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   4.5  
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     29   4.5  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score =  271 bits (664), Expect = 4e-73
 Identities = 129/182 (70%), Positives = 144/182 (79%)
 Frame = -3

Query: 675 EKVAEGALPVYXLDRDVQXRXKVLSXMXXXXXXXXXXKWDVPIPKVRAQADAEVFKVLKS 496
           + V EGALP Y LDRD   R KVLS            KW+VP+PKVR  A+ E+FKVL++
Sbjct: 409 DDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLPKVRPVAEEEMFKVLRT 468

Query: 495 GKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIG 316
           GK K K WKRMVTK TFVG  FTRKPPK+ERFIRP  LRF KAHVTHPELK TF L II 
Sbjct: 469 GKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLDIIS 528

Query: 315 VKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVL 136
           VKKNP+ QMY++LGV+T+GT+IEVN+SELGLVT AGKVVWGKYAQVTNNPENDGCINAVL
Sbjct: 529 VKKNPNGQMYSTLGVLTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVL 588

Query: 135 LV 130
           LV
Sbjct: 589 LV 590


>09_06_0132 -
           21042653-21042873,21042950-21043027,21043106-21043167,
           21043504-21043578,21043664-21043752,21043825-21043905,
           21044939-21045076,21046299-21046429,21046521-21046592,
           21047218-21047275,21047362-21047461,21047544-21047617,
           21047701-21047836,21047913-21048137,21048211-21048446,
           21048949-21049081,21049195-21049484
          Length = 732

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 22/83 (26%), Positives = 34/83 (40%)
 Frame = +2

Query: 317 PIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 496
           PII     AF+      A +    + L+  + + GL+V F    + L    F  + FD  
Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448

Query: 497 DFRTLNTSASAWALTLGMGTSHF 565
               +N S SA     G+G S +
Sbjct: 449 SRLPVNPSPSAVPSKPGLGPSSY 471


>11_05_0069 -
           18814789-18815326,18815742-18816001,18816077-18816631,
           18816907-18817062
          Length = 502

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 251 ITVPLVMTPKLVYICELGFFLTPIIGK 331
           +TV L+MTP  +++  + F L  +IGK
Sbjct: 71  LTVSLIMTPLALFVAFVSFHLAALIGK 97


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 73   NSSAVIEAS*FSLXLNNKLDQQHSINAAIILRIIRDLSVFTP 198
            + S  + A+ F L   ++LD++   NA+ ++ +IR L VFTP
Sbjct: 918  DESGFLSATSFGL---SRLDKERIYNASAVVVLIRSLLVFTP 956


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 537 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 391
           + Q   +V K +KSG  KRK+ K++ T VTF      +K   PK+ R   P
Sbjct: 13  KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,101
Number of Sequences: 37544
Number of extensions: 288497
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)