Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P08
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...   282   2e-76
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...   282   2e-76
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    29   4.1  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   7.1  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   7.1  

>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score =  282 bits (691), Expect = 2e-76
 Identities = 133/182 (73%), Positives = 152/182 (83%)
 Frame = -3

Query: 675 EKVAEGALPVYXLDRDVQXRXKVLSXMXXXXXXXXXXKWDVPIPKVRAQADAEVFKVLKS 496
           E+  +GA+P Y LDR  Q    VLS M          K++VPIP+VRA +DAE FKV+K+
Sbjct: 78  EQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKT 137

Query: 495 GKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIG 316
           GK+ RK WKRMVTKVTFVGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+G
Sbjct: 138 GKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVG 197

Query: 315 VKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVL 136
           VKKNPSSQMYTSLGVITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVL
Sbjct: 198 VKKNPSSQMYTSLGVITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVL 257

Query: 135 LV 130
           L+
Sbjct: 258 LI 259


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score =  282 bits (691), Expect = 2e-76
 Identities = 133/182 (73%), Positives = 152/182 (83%)
 Frame = -3

Query: 675 EKVAEGALPVYXLDRDVQXRXKVLSXMXXXXXXXXXXKWDVPIPKVRAQADAEVFKVLKS 496
           E+  +GA+P Y LDR  Q    VLS M          K++VPIP+VRA +DAE FKV+K+
Sbjct: 78  EQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKT 137

Query: 495 GKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIG 316
           GK+ RK WKRMVTKVTFVGE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+G
Sbjct: 138 GKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVG 197

Query: 315 VKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVL 136
           VKKNPSSQMYTSLGVITKGT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVL
Sbjct: 198 VKKNPSSQMYTSLGVITKGTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVL 257

Query: 135 LV 130
           L+
Sbjct: 258 LI 259


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 344 FSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 496
           FS  C TW FL+++ I  +   N   L+ K      T     F  FL  LP
Sbjct: 122 FSRRCSTWLFLSIAFIRTLIVRNPMNLKYKQLSNQPTAFYTIFGVFLLSLP 172


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 316  SYYR*TESSF*FRMCDMGFLEPQCHRS 396
            SY     S   + MC+MG + P CH+S
Sbjct: 1370 SYQDVDRSQMNYLMCNMGTVSPSCHKS 1396


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 316  SYYR*TESSF*FRMCDMGFLEPQCHRS 396
            SY     S   + MC+MG + P CH+S
Sbjct: 1370 SYQDVDRSQMNYLMCNMGTVSPSCHKS 1396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,713
Number of Sequences: 27780
Number of extensions: 260094
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)