Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P06
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    87   5e-19
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    85   2e-18
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   0.82 
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   1.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   1.4  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   3.3  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    24   4.4  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    24   4.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   4.4  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    24   5.8  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 87.0 bits (206), Expect = 5e-19
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = -1

Query: 255 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGXW 91
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR   G W
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIW 55


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 85.0 bits (201), Expect = 2e-18
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = -1

Query: 255 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGXW 91
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR   G W
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIW 55


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 FIASLPQNEQVYFACWVTS 169
           F+A + +NE  +FA W TS
Sbjct: 84  FVAHVSENENTFFAIWYTS 102


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 172 LFDHFT*RGTVTCAIFASNSNLFGT 246
           +FD FT    +T  I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 207  VCHICQ*FQPFWYVWPF 257
            + ++ Q FQ  WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 268
           I L I   + P    Y+P++P  L RL  L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 275 YRRGLPKWPNVPKRLELL 222
           YR+ LP  P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 110 RFIASLPQNEQVYFA 154
           RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 20  LLRQQ*WXIPKLLLLQSSCIAYKSQXPTQXRFIASLPQNEQVYFACWVTSIFLTI 184
           L+ Q+ +  P+  L+ +  IA     P Q +F+    +NE +Y A   TSIF ++
Sbjct: 232 LVSQKVYEYPEETLVYAGKIA-----PCQLKFLKLKFENEILYTAMHTTSIFKSV 281


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 268 EVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 137
           EV ++GQ Y    + W +  T   ++T +      +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,101
Number of Sequences: 5004
Number of extensions: 22919
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)