Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P06
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 95 1e-20
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 94 2e-20
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857... 29 0.72
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.2
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 27 3.8
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 5.1
02_01_0679 - 5048653-5051394 26 5.1
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 25 8.9
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 95.1 bits (226), Expect = 1e-20
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = -1
Query: 258 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGXWDL*A 79
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VG W
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGC-- 82
Query: 78 MQEDCSRRSLG 46
+DC + G
Sbjct: 83 --KDCGKVKAG 91
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 93.9 bits (223), Expect = 2e-20
Identities = 43/68 (63%), Positives = 49/68 (72%)
Frame = -1
Query: 249 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGXWDL*AMQE 70
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VG W +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGC----K 88
Query: 69 DCSRRSLG 46
DC + G
Sbjct: 89 DCGKVKAG 96
>05_06_0267 -
26784861-26784896,26785324-26785404,26785530-26785702,
26785780-26785938,26786199-26786328,26786447-26786609,
26787027-26787109,26787605-26787664,26787819-26787940,
26789126-26789275,26789354-26789546,26790156-26790393,
26791240-26791320,26791403-26791647
Length = 637
Score = 29.1 bits (62), Expect = 0.72
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 62 LQSSCIAYKSQXPTQXRFIASLPQNEQVYFA--CW 160
L+SS I K + FIASL E+++FA CW
Sbjct: 197 LKSSTIREKGEKYGHVNFIASLDSKEELFFAEVCW 231
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 168 EVTQHAKYTCSFCGKDAM 115
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -1
Query: 294 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 148
+ L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 11 YELEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 290 LCQLLYRRGLPKWP 249
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 284 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 165
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 294 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMV 178
FS+ S RF+++ R + I+G G + LRK V
Sbjct: 166 FSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKV 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,594,887
Number of Sequences: 37544
Number of extensions: 140701
Number of successful extensions: 308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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