Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P06
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   103   2e-23
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.030
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    26   6.0  
Z71266-9|CAD24483.1|  489|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AB040992-1|BAB21560.1|  489|Caenorhabditis elegans CeCRMP/DHP-1 ...    25   7.9  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  103 bits (247), Expect = 2e-23
 Identities = 44/56 (78%), Positives = 49/56 (87%)
 Frame = -1

Query: 255 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRXCVGXWD 88
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   G W+
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWN 56


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 298 LLFSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 128
           L +S   C  + Y+  + +QK +N W+  H +RCL   N     +N T+    L LW
Sbjct: 403 LSYSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 213 GTRYGASLRKMVKKMEVTQHAK 148
           G RY + ++KMV K  VT H K
Sbjct: 46  GDRYVSKIKKMVGKFTVTLHIK 67


>Z71266-9|CAD24483.1|  489|Caenorhabditis elegans Hypothetical
           protein R06C7.3 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 286 VNFCIGEVYQNGQTYQKGWNYWQIW 212
           ++FC  + ++NG++   G+N W+ W
Sbjct: 93  IDFCCPD-HRNGESLIAGYNRWRSW 116


>AB040992-1|BAB21560.1|  489|Caenorhabditis elegans CeCRMP/DHP-1
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 286 VNFCIGEVYQNGQTYQKGWNYWQIW 212
           ++FC  + ++NG++   G+N W+ W
Sbjct: 93  IDFCCPD-HRNGESLIAGYNRWRSW 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,833
Number of Sequences: 27780
Number of extensions: 130658
Number of successful extensions: 337
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)