Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P05
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    28   1.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   1.7  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   2.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   8.9  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 472 KSQHETRVGDSVVGQYSLLESDGTK 398
           K+  ++ VGDS+ G YS+LE+ G +
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGAE 419


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 516 PASPTACQTPTPATSRASTRPASV 445
           P SP A +TP  ++S A  RP SV
Sbjct: 254 PYSPPANETPASSSSSAKARPVSV 277


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 338 VLAHDGVESRVSISSVVDSALSTVRFQERVLSY 436
           +LAH  +E  V IS++  + ++  RFQ R LS+
Sbjct: 461 ILAHGEIEVTVPISTIYVAPVNIRRFQGRDLSF 493


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 360 NPE*ASAA*STVRLVPSDSKREYCPTTLSPTRVSCWLLTSPV 485
           NP    A  S +  +PSDS   +  T  SPT  + ++  SP+
Sbjct: 98  NPSNPHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPL 139


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 202 KLRDRNPSERHEQQRLSGLQERSQRN--EPRARPPQSGPERECVQERGPCARRR*IQSEH 375
           +LR R+PS    + R     ERS R    PR R     P+    + R P   RR  +  H
Sbjct: 112 RLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDG---RSRSPDYDRRSPKRNH 168

Query: 376 QQRS 387
           +  S
Sbjct: 169 RSPS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,043
Number of Sequences: 5004
Number of extensions: 26412
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)