Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P05
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.049
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +1

Query: 190  HRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGP 342
            H   K + + P ++ +QQ+    Q++SQ  +P+ + PQ   +++  Q++ P
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQ--QPQQQQPQPQQQQQQQQQQQP 1543



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 555 SRPLTXARFMAXTPASPTACQTPTPATSRASTRPASVTA 439
           SRPL         PA+ T   T T  T+  +   A+ TA
Sbjct: 91  SRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTA 129



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +1

Query: 196 PTKLRDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERGP 342
           P +    + S   + Q  +  Q++ Q+ + + +  Q   +++  Q+RGP
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGP 858


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 308 PLCGGRALGSFRCDRSCSPLSRCCS 234
           P CG   +  F CD S S LS  C+
Sbjct: 47  PFCGPNVINPFFCDMSPS-LSLLCA 70


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 308 PLCGGRALGSFRCDRS 261
           P CG   +  F CD S
Sbjct: 46  PFCGPNVINPFFCDMS 61


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 223 SERHEQQRLSGLQERSQRNEPRARPPQ 303
           SE H  ++    ++      PR  PPQ
Sbjct: 206 SEEHGNKKKKNKEDEDDGATPRKAPPQ 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,561
Number of Sequences: 438
Number of extensions: 2047
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)