Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P03
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 145 2e-35
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 142 2e-34
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 135 3e-32
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 64 7e-11
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 33 0.27
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.47
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.47
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 3.3
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 3.3
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 3.3
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 5.7
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 5.7
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 5.7
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 28 5.7
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 28 5.7
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 145 bits (352), Expect = 2e-35
Identities = 81/205 (39%), Positives = 121/205 (59%), Gaps = 2/205 (0%)
Frame = -3
Query: 710 ESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTE 531
ESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 13 ESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQY 71
Query: 530 ENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 357
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 72 E-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAKL 129
Query: 356 LDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKA 177
++ R LL + AH+E A+EG+T D V++HFI++V+K+G LYE+D
Sbjct: 130 VNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSCAP 186
Query: 176 FPVNHGPTSQETLLEDAAKICKEFM 102
FP G T+ T+++DA+ KE M
Sbjct: 187 FPRPLGATTDSTMIKDASTAIKELM 211
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 142 bits (344), Expect = 2e-34
Identities = 87/218 (39%), Positives = 120/218 (55%), Gaps = 2/218 (0%)
Frame = -3
Query: 710 ESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTE 531
ESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK +
Sbjct: 9 ESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKKVD 58
Query: 530 E--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 357
E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EAK
Sbjct: 59 EIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEAKK 118
Query: 356 LDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKA 177
+ R L + + H A +GQT PS + V HHFI FV K+G LYE+D R+
Sbjct: 119 VGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSRRP 175
Query: 176 FPVNHGPTSQETLLEDAAKICKEFMARDPNEXRFTXIA 63
F GPTS TL++DA C+ + + N F+ IA
Sbjct: 176 FAREIGPTSDATLVKDAGAACQHLIEKLDN-VSFSAIA 212
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 135 bits (327), Expect = 3e-32
Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 2/197 (1%)
Frame = -3
Query: 710 ESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTE 531
ESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 12 ESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQY 70
Query: 530 ENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 357
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 71 E-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAKL 128
Query: 356 LDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVHKDGALYELDGRKA 177
+ R LL + AHKE A+EG+T P + V +HFI++V+K+G L+E+D
Sbjct: 129 VGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCSP 185
Query: 176 FPVNHGPTSQETLLEDA 126
FP G T+ T++ DA
Sbjct: 186 FPRPLGATTDSTMIRDA 202
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 64.5 bits (150), Expect = 7e-11
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 2/183 (1%)
Frame = -3
Query: 710 ESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKTE 531
ES+P V + L+ GV + ++ LD + + RP ++ LF ++ +
Sbjct: 11 ESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQGD 60
Query: 530 ENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGLD 351
E + ++ NIF+ Q I NAC T AL++ + N D + ++ A LD
Sbjct: 61 ETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDLD 117
Query: 350 ATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVHKDGALYELDGRKA 177
RG L SE I H +++ + + E N+HF+++V +YELDG +
Sbjct: 118 PNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDGLRE 177
Query: 176 FPV 168
P+
Sbjct: 178 LPL 180
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -3
Query: 428 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 249
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 248 PVNHHFISFVHK 213
+ ++ +V+K
Sbjct: 193 AKDQGYVDYVYK 204
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 401 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 255
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 401 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 255
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 401 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 255
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -3
Query: 560 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 393
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 392 --GHMQKFLNEA-KGLDATARGKLLEK 321
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -3
Query: 560 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 393
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 392 --GHMQKFLNEA-KGLDATARGKLLEK 321
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = -3
Query: 560 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 393
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 392 --GHMQKFLNEA-KGLDATARGKLLEK 321
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 638 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 462
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 461 NACGTIALVHSVANNTDIIELSDGH 387
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 638 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 462
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 461 NACGTIALVHSVANNTDIIELSDGH 387
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 638 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 462
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 461 NACGTIALVHSVANNTDIIELSDGH 387
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 213 FMDKADKMMVDGIFST--WCICLAF 281
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 213 FMDKADKMMVDGIFST--WCICLAF 281
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,549
Number of Sequences: 27780
Number of extensions: 329674
Number of successful extensions: 985
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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