Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P01
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu... 48 5e-07
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 1.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.9
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 3.3
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 3.3
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 4.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 4.3
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 4.3
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 5.7
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.5
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 24 9.9
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 24 9.9
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 24 9.9
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 24 9.9
>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 137
Score = 48.4 bits (110), Expect = 5e-07
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -1
Query: 295 NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTIL 134
+LSG+ KYGL DD L E D +AL RLP +R +RI RA+QLS++ IL
Sbjct: 29 HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKIL 83
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -2
Query: 129 KEEWTKYEEDSLXLTPIVEQVEKERLEREQWE 34
K EWTK EED L P++ +V ER ERE ++
Sbjct: 85 KSEWTKPEEDYHYLRPVLAEVIAERKEREAFD 116
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 290 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNSQYLFSTSIH 463
K + P ++ +T N + + SH GS +KSH F ++D N ++ N+ S+ +H
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNNT-TTSSQVH 376
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 195 LTRETSVLYVPYSSPCKKQSYTKEEWTKYEEDSLXLTPIVEQVEKERLEREQWE 34
L+ T L +SSP KK+ ++ + L L+ +VEQ + R+ +E
Sbjct: 633 LSHSTGSLMANFSSPTKKRRLESVDFIFLQRKGLILSYLVEQNGAFEISRKMFE 686
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 350 HHGSCSKSHFIDSQIYDFNVILT 418
HHGS SK H I Q+ ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 147 KKQSYTKEEWTKYEEDSLXLTPIVEQVEKERLEREQWEKE 28
+KQ KEE EE +T ++E+ ++ +LE E+ E E
Sbjct: 129 RKQRAAKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAE 168
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = -2
Query: 147 KKQSYTKEEWTKYEEDSLXLTPIVEQVEKERLEREQW 37
++ + ++ + YE D LT + ++E E + ++ W
Sbjct: 288 EEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +1
Query: 190 RQQHGMEVCGVLQLHQEFHASNHPV 264
+ +HG VC L+ H N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 179 PYCTCHTALHAKNNPTLKKSGQ 114
PYC C K T K+SGQ
Sbjct: 30 PYCVCRVGEVVKRTQTDKRSGQ 51
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 4.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 307 KWAYNLSGFNKYGLLRDD 254
KW + + F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 129 KEEWTKYEEDSLXLTPIVEQVEKERLEREQWEKE 28
+E+ T YEED + QV++E LE E+ E+E
Sbjct: 58 EEDDTNYEEDIID-DEESAQVDEEELEEEEEEEE 90
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 5.7
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -2
Query: 213 DFHPMLLTRETSVLYVPYSSPC-KKQSYTKEEWTKYEEDSLXLTPIVEQVEKERLEREQW 37
D H LL R + Y+S +KQ +K + D + VEKE+L W
Sbjct: 260 DGHKQLLQRRHAKWVTLYNSNLDQKQPVSKRNLIRQLIDWERVQSKSIGVEKEKLGGGDW 319
Query: 36 EKEY 25
EK Y
Sbjct: 320 EKAY 323
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 191 REKLPYCTCHTALHAKNNPTLK 126
+E L +C+ H A+ KNN TL+
Sbjct: 171 KEVLSWCSEHRAILKKNNSTLE 192
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 225 KHSADFHPMLLTRETSVL 172
KH D+H +L ++T+VL
Sbjct: 24 KHEIDYHESILNKKTAVL 41
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -2
Query: 141 QSYTKEEWTKYEEDSLXLTPIVEQVEKERLEREQWE 34
Q YT E + ++++ +TP+V + K ++ + E
Sbjct: 178 QGYTSAEAPVFVDENICVTPVVVSLVKNSFKKRKHE 213
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 24.2 bits (50), Expect = 9.9
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = -2
Query: 171 YVPYSSPCKKQSYTKEEWTKYEEDSLXL 88
Y P+++PCK+ + +++ K ++++ L
Sbjct: 28 YAPWAAPCKQMNQVFDQFAKDTKNAVFL 55
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 188 EKLPYCTCHTALHAKNN 138
E +PY C+TA KN+
Sbjct: 998 ENIPYALCYTAAQLKNS 1014
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,902
Number of Sequences: 5004
Number of extensions: 35316
Number of successful extensions: 144
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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