Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_P01
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568... 45 3e-05
03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061... 42 2e-04
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895... 33 0.086
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 29 1.4
11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679 28 4.3
05_06_0025 + 25018426-25018596,25018692-25018892,25018983-250192... 27 5.6
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 27 5.6
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 27 5.6
08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119 27 9.8
>07_01_0744 +
5687269-5687365,5687466-5687689,5688307-5688354,
5689057-5689125
Length = 145
Score = 44.8 bits (101), Expect = 3e-05
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 289 SGFNKYGLLRDDCL--HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTIL 134
S KYGL DD + D+ EAL RLP VVD RN R+ RA+ LSM+ L
Sbjct: 27 SRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARNQRLKRAMDLSMKHQYL 80
>03_06_0379 +
33505242-33505347,33505474-33505631,33506127-33506174,
33506851-33506919
Length = 126
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = -1
Query: 289 SGFNKYGLLRDDCL---HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTIL 134
S KYGL DD H+ D+ EAL RLP VVD R+ R+ RA+ LSM+ L
Sbjct: 30 SRLRKYGLRYDDLYDPKHDL-DIKEALERLPREVVDARHQRLKRAMDLSMKHQYL 83
>08_01_0907 +
8949102-8949160,8949662-8949842,8951816-8951941,
8952082-8952092,8952237-8952360,8952447-8952546,
8952807-8952849,8953033-8953153
Length = 254
Score = 33.5 bits (73), Expect = 0.086
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 277 KYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTIL 134
+Y L D + D+ EAL RLP VVD N R+ R + LS + L
Sbjct: 28 RYDDLFDAYQYHGLDIKEALARLPREVVDAHNQRLKRTMDLSTKHQYL 75
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 167 CHTALHAKNNPTLKKSGQNMKKIPXT*PQLLSKLRKRGW 51
C T +HA NN +K SG + P L+ R+RGW
Sbjct: 485 CATCIHAWNN-RIKHSGSSRTATTAGAPNPLAHRRRRGW 522
>11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679
Length = 939
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 132 TKEEWTKYEEDSLXLTPIVEQVEK 61
TKE+W KY + + PIV +++K
Sbjct: 400 TKEQWEKYRDSIVENDPIVNRMQK 423
>05_06_0025 +
25018426-25018596,25018692-25018892,25018983-25019236,
25019468-25019540,25019659-25019715,25020219-25020298,
25020386-25020448,25020678-25020765,25021055-25021156,
25021296-25021369,25021690-25021754,25021933-25022096,
25022179-25022246,25022337-25022397,25022729-25022766,
25023154-25023329,25023747-25023859,25023944-25023955
Length = 619
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = -1
Query: 289 SGF-NKYGLLRDDCLH------ETPDVTEALRRLPSHVVDER 185
+GF N YGL RDD E D+ ALR P H+V E+
Sbjct: 320 NGFINYYGLQRDDIREMREHYKEHGDIDMALRNFPRHLVAEK 361
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 147 KKQSYTKEEWTKYEEDSLXLTPIVEQVEKERLEREQWEKEY 25
+KQ E+W + + + I E++++ +E +Q E+EY
Sbjct: 536 EKQKDLTEQWEREKSVMTKIQSIKEEIDRVNVEIQQAEREY 576
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 147 KKQSYTKEEWTKYEEDSLXLTPI------VEQVEKERLEREQWEKE 28
KK+ + EE + EED + P E+VEKE + E+ EKE
Sbjct: 246 KKEEHVDEEEEEEEEDPEEMVPASEEEADAEEVEKEEEDPEEVEKE 291
>08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119
Length = 617
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 87 TPIVEQVEKERLEREQWEKEY*MRHGIV 4
TP+V +V K+R E++ EK + HG++
Sbjct: 322 TPLVARVVKQRREKKLKEKFFKQNHGLL 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,117,658
Number of Sequences: 37544
Number of extensions: 206298
Number of successful extensions: 604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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