Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_P01
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 109 IFCPLFFSVGLFFAWRAVWHVQYGSFSR 192
           +FC ++  +G  F   ++W +   +F R
Sbjct: 123 LFCQIYAMLGSLFGCGSIWTMTMIAFDR 150


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 109 IFCPLFFSVGLFFAWRAVWHVQYGSFSR 192
           +FC ++  +G  F   ++W +   +F R
Sbjct: 89  LFCQIYAMLGSLFGCGSIWTMTMIAFDR 116


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 164 HTALHAKNNPTLKKSGQNMKKI 99
           H  LH  ++P+  +SGQ  + +
Sbjct: 810 HHGLHINSSPSSVQSGQQQQSV 831


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 380 IDSQIYDFNVILTQTTRNSQYLFST 454
           ID+ + D N  L + TRNS   F T
Sbjct: 543 IDNWMLDLNSGLNKITRNSLDCFFT 567


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 380 IDSQIYDFNVILTQTTRNSQYLFST 454
           ID+ + D N  L + TRNS   F T
Sbjct: 543 IDNWMLDLNSGLNKITRNSLDCFFT 567


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 SSTTWDGSLRSASVTSGVSCKQSS 260
           +ST   GSL ++   SGVS  +SS
Sbjct: 233 TSTPGSGSLPASPADSGVSDVESS 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,445
Number of Sequences: 438
Number of extensions: 2552
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)