Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O23
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm rec...    28   5.7  
AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine re...    28   7.5  
U97008-8|AAB52306.2|  307|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 164 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/90 (30%), Positives = 40/90 (44%)
 Frame = -2

Query: 314 MQVLHCTILFLAMLTFFINKYCYLNYLFILF*HSVIFTKNAKLFTFNINIKGNLLYVYLQ 135
           M  L  TI+F AM+T   +  CY  YL      S+I  +    FT N+ I+   LY  L 
Sbjct: 199 MSTLIATIVFTAMITSSFSVVCYYGYLSYKRITSLI-DEGQSEFTRNLQIQ---LYKALV 254

Query: 134 YFKLIIFHFVY*DSNAIAILDIFCSAHLSP 45
              +I    +Y    +  +L  F   ++SP
Sbjct: 255 VQAIIPIVLMYLPVGSYLVLPAF-GINISP 283


>AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein169 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 190 NFSHSTLILKAIY-CMSTYSILN**YFILYIK-IVMQLLFSISFALHIFHLLFEKFXARL 17
           N  +S  I+K I  C+ +       +F+L I+  V  L FSISFAL +  ++F  F   +
Sbjct: 161 NQENSISIIKNIIPCVKSEIFDRKGFFVLSIENTVTGLCFSISFALFVIQIIF--FVVSI 218

Query: 16  YCNLF 2
           +  LF
Sbjct: 219 FLYLF 223


>U97008-8|AAB52306.2|  307|Caenorhabditis elegans Hypothetical
           protein C03G6.6 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 302 HCTILFLAMLTFFINKYCYLNYLF 231
           +CTI FL  LTF+I+ Y  L+Y +
Sbjct: 3   NCTIFFLLALTFYIS-YIILSYYY 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,518
Number of Sequences: 27780
Number of extensions: 281600
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)