Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O19
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   138   6e-34
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    36   0.004
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   1.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   6.7  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  138 bits (333), Expect = 6e-34
 Identities = 69/155 (44%), Positives = 101/155 (65%), Gaps = 10/155 (6%)
 Frame = -3

Query: 509 LGLPTEAYQAVEEVHDDGTPTSRTFXHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQR 330
           +GLPT AY A++E+ DDG+ +SRTF H+PS I          EHLLRD +D +VG+L+ R
Sbjct: 138 VGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATR 197

Query: 329 ITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDN-- 156
           +T Q   L+GL  +LTEI DYL +V  G LP+NH I+ +LQ +FNLLP+I +   +    
Sbjct: 198 VTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQA 257

Query: 155 --------LYVKTNDQSLVVYLAALVRSIIALHNL 75
                     V +NDQ + +Y++++VR++IALH+L
Sbjct: 258 LESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDL 292


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -3

Query: 299 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 120
           L S +  + DY+  V  GS P N  +   L   F+L+P +   +F         D  +VV
Sbjct: 223 LLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVV 282

Query: 119 YLAALVRSIIALHNLXN 69
           YLA  +R+ + + +  N
Sbjct: 283 YLANTLRTQVDIASRLN 299


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -3

Query: 230 HQIIYQLQDIFNLLPDIANDNFIDNLYVKTN---DQSLVVYLAALVRSIIAL 84
           H + Y  + + N+   IA ++ + +L +K N     S++V+ AA+VRS IAL
Sbjct: 130 HLVYYMSRPLSNIFGLIATNHSL-SLLLKNNYYGSISILVFAAAIVRSEIAL 180


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 227  QIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSL 126
            +I+  L D+F+LLP+ AN  F+D L +   + SL
Sbjct: 1459 KIVRALIDLFHLLPNNAN-RFMDELLICVVEFSL 1491


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 290 QLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 153
           +++  R Y   + +       Q+I  L  + N+LP +  D   DNL
Sbjct: 193 RISAARAYSAVILESKQSTRDQVIPLLPSLMNILPPLQQDRDSDNL 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,416
Number of Sequences: 5004
Number of extensions: 29591
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)