Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O19
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   181   3e-46
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    27   6.0  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    27   6.0  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  181 bits (440), Expect = 3e-46
 Identities = 84/156 (53%), Positives = 116/156 (74%)
 Frame = -3

Query: 512 DLGLPTEAYQAVEEVHDDGTPTSRTFXHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQ 333
           ++GLPTEAY  V+EVHDDGTP  +TF HVPS+I          EHLLRDIKD T G+LSQ
Sbjct: 163 NIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQ 222

Query: 332 RITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 153
           RIT+QL+GL+GL SQL  I  YL  + +G+LP+NH +IY +Q++ NLLPD+ + ++I + 
Sbjct: 223 RITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEVLNLLPDVTHPDYIVSQ 282

Query: 152 YVKTNDQSLVVYLAALVRSIIALHNLXNXKMTNRDA 45
            V+TNDQ + VY+ +LVRS++ALHNL + K++ + A
Sbjct: 283 NVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKA 318


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = -3

Query: 377 LLRDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLP-MNHQIIYQLQDI 201
           + +D++DT+ G +S   T +      +HS L +  +++V   Q   P M  ++I++    
Sbjct: 239 IYQDLRDTSKGKISSSFTLESTTKSSIHSLLIDEHNWVVDQIQKKFPDMGLELIFEEARK 298

Query: 200 FNLLPDIANDNFIDNLYVKTNDQSLVVY 117
           F ++ ++ +  F   L +   D+++  Y
Sbjct: 299 F-VIAELQHITFEQFLPILLGDETMKKY 325


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 230 HQIIYQLQDIFNLLPD 183
           H  IYQ+ D+ NLLPD
Sbjct: 29  HPCIYQIYDLLNLLPD 44


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 230 HQIIYQLQDIFNLLPD 183
           H  IYQ+ D+ NLLPD
Sbjct: 29  HPCIYQIYDLLNLLPD 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,339,823
Number of Sequences: 27780
Number of extensions: 165140
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)