Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O18
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 395 SKQYIFQQTPRNCKCNITPC*TIKKTIQ 312
           SK+ +   TP+  KC++     IKK ++
Sbjct: 270 SKKKLSPATPKGSKCSMITTPEIKKEVE 297


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 340 GVILHLQFLGV 372
           GV++HLQ LGV
Sbjct: 30  GVLIHLQILGV 40


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 74  FVXNSIRISNELLAIEDQHKSLIKICSVVFE 166
           F    I+   ELL  E+  K L+  CS + E
Sbjct: 79  FKPQGIKAVMELLIDENSVKQLVSDCSTISE 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,595
Number of Sequences: 438
Number of extensions: 3061
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)