Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_O16
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 1.6
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 2.9
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 2.9
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 26 2.9
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 3.8
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 6.7
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 6.7
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 25 6.7
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 25 8.8
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 245 YYSKLFSLSHYSNSLKRTDTGRRHPKF*EYKSNS 346
Y KL + + L DT +RHPKF + NS
Sbjct: 1282 YVEKLKTSHKLDDILSPRDTSKRHPKFLSSRRNS 1315
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 479 GIRAGNMKYLLVVLLFLYDSCYGRVALQETD 387
G G + +L +YD YGRV QETD
Sbjct: 345 GTLGGRFTTIEGLLAQVYDELYGRVFSQETD 375
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 242 HYYSKLFSLSHYSNSLKRTDTGRRHPKF*EYKSNSTIDPSHRFFSGTL 385
H SK F H S+S R+D RH K N +H TL
Sbjct: 41 HTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQTHPKHDKTL 88
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 417 LRSRCFTRNGYSVPEKNRCEGSIVEFDLYSQNFGCRRPVSVRF 289
+R F +G ++ KNR E YS GC + V F
Sbjct: 134 IRRSMFPHSGEALKWKNRSRMLANELTYYSPTLGCMQEVDAEF 176
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 317 DAGDPYPSVLVNLNNDLKKITWNSN 243
D G +PS+ N N K TWN N
Sbjct: 407 DQGSAFPSLAKNPVNPYSKDTWNLN 431
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 269 SHYSNSLKRTDTGRRHPKF*EY-KSNSTIDPSHRFFSGTLYPFLVKQRDRNTNRKGTT 439
S+ S++ +R + R F Y KS++ ++PS S + P +RD N GT+
Sbjct: 290 SYPSSNNQRRPSASRVRSFSNYVKSSNVVNPSLSQASLEIIPRKSMKRDSNAQNDGTS 347
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 344 STIDPSHRFFSGTLY--PFLVKQRDRNTNRKGT 436
S IDP H F +G Y F+++++ T R GT
Sbjct: 779 SIIDPPHEFLTGENYQSAFVIQEKQTET-RTGT 810
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 1 IMHVACLYTLHKKSIWFLDM 60
I+ +A LY + KKS+W +
Sbjct: 568 ILSIALLYLIEKKSVWLASL 587
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 447 SCFVVPLRFVLRSRCFTRNGYSVPEKNRCEGSI 349
S PL V+++ TR S+PE +C+GS+
Sbjct: 219 SSLTTPLD-VVKTLLQTRGSSSIPEVRKCKGSL 250
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 308 DPYPSVLVNLNNDLKKITWNSNGEVI 231
D YP + +L KK+ NSN E++
Sbjct: 131 DNYPEYIQHLPGFTKKVVQNSNPEIL 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,637
Number of Sequences: 5004
Number of extensions: 42109
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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