Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O16
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0172 - 1954275-1954533,1954546-1954873,1955772-1956174           29   2.9  
12_01_0351 - 2687999-2688570,2688691-2688808                           27   6.7  
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200...    27   8.8  

>04_01_0172 - 1954275-1954533,1954546-1954873,1955772-1956174
          Length = 329

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 401 KQRDRNTNRKGTTKQLVDISCCPRGFLRFNHRPA 502
           K R+  T   GTTK L DI C  +     N RPA
Sbjct: 105 KARNHLTMPHGTTKHLYDIQCRDKSRRGINWRPA 138


>12_01_0351 - 2687999-2688570,2688691-2688808
          Length = 229

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 371 FSGTLYPFLVKQRDRNTNRKGTTKQL--VDISCCPRGFLRFNHRPA 502
           F GTLY   V     N   K  TK L   D+   P+G + F   P+
Sbjct: 123 FEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPS 168


>02_04_0589 -
           24117688-24119282,24119881-24119908,24120004-24120089,
           24120196-24120220,24121188-24121326,24122344-24122567,
           24122674-24122691
          Length = 704

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 438 VVPLRFVLRSRCFTRNGYSV---PEKNRCEGSIVEFDLYSQNFGC 313
           V+P+R  LRS   T+ G      PE NR  G I  +   S + GC
Sbjct: 629 VLPMRLTLRSCSITKQGGDPQLGPELNRVAGGIA-YSCRSDDSGC 672


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,898
Number of Sequences: 37544
Number of extensions: 261465
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)