Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O15
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    50   2e-07
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    50   2e-07
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    28   0.61 
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    27   1.4  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   5.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   7.5  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 26/37 (70%)
 Frame = -3

Query: 199 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRI 89
           GKVHGSLARAGKVK QTPKVE         GRA +R+
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRL 38


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 26/37 (70%)
 Frame = -3

Query: 199 GKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRI 89
           GKVHGSLARAGKVK QTPKVE         GRA +R+
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRL 38


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 109 GRAKRRIQVQQKICQRCADLRTSSRTQRQCID 14
           G  K++  +QQKI Q  ADL     T+RQ +D
Sbjct: 53  GNKKQKRALQQKISQMEADLSQKHATERQKLD 84


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 82  VLEFYA*HGQSSSSFFVVFPLWGFVL*LYLH 174
           VL+F+  H   S  + +  P W FVL +Y+H
Sbjct: 35  VLKFFEIHYYLSRWWALAIPTWLFVLVIYIH 65


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 13  NLCIGVGSATTSEGLHNVDKSSVVLEFYA*HG 108
           NLC  + + TTS  L   D S VV+  +  HG
Sbjct: 185 NLCRSIHNITTSYRLDPRDTSYVVMPLFHVHG 216


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 458 IRPADDLSGLVDKILQYAVAYQRAIDTRPGRQWP 357
           I P  +LS  VDK LQ+ +  + ++       WP
Sbjct: 195 IAPLKELSHCVDKSLQFYLVAEDSVQLAEYPSWP 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,691
Number of Sequences: 5004
Number of extensions: 28548
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)