Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O15
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    57   7e-09
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   6.6  
L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = -3

Query: 208 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQVQQK 74
           LLGGKVHGSLARAGKV+ QTPKV+       K GRA RR+Q  ++
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRR 112



 Score = 32.7 bits (71), Expect = 0.13
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 87  KYNRRFVNVVQTFGRRRGPNANA 19
           +Y RR+VNV    G++RGPN+N+
Sbjct: 108 QYTRRYVNVASGPGKKRGPNSNS 130


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 417  FTICSCISEGNRHTSWTSMARS 352
            F I  C   G  HT WT   RS
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRS 4952


>L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical
           protein D2007.5 protein.
          Length = 443

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 74  DLSTLCRPSDVVADPTPMHRFISK 3
           D+STL R + V A  TPMHR   K
Sbjct: 112 DMSTLLRSAIVSARMTPMHRLYVK 135


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 298 LHRQLQQEYECVP*SDQWTPGH*R-PGRVSIAL*YATAYCKI 420
           LH   ++E EC P   +    H + PGR S A  YA   C+I
Sbjct: 375 LHDGKRRESECAPCGSKALCAHHKLPGRTSAAEQYAEKNCEI 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,660,287
Number of Sequences: 27780
Number of extensions: 166865
Number of successful extensions: 352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)