Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O13
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   139   1e-34
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   138   3e-34
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   2.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   3.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   6.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   6.2  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    24   8.2  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   8.2  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  139 bits (337), Expect = 1e-34
 Identities = 63/121 (52%), Positives = 84/121 (69%)
 Frame = -2

Query: 365 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 185 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 6
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 5   R 3
           R
Sbjct: 121 R 121


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  138 bits (334), Expect = 3e-34
 Identities = 62/121 (51%), Positives = 84/121 (69%)
 Frame = -2

Query: 365 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 185 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 6
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 5   R 3
           R
Sbjct: 121 R 121


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 126 TEDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 236
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 250 QLASKSWLRMTLIGSMCVVL 191
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 202 CVVLPSFVIFTFAHLLESRL 143
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 190 PSFVIFTFAHLLESRLSPRSSVGANVMELHLHISAGHQAVLHARLCNRW 44
           P   I TF+  + +      + G +V +L+L + + H   L +R C +W
Sbjct: 261 PCLYIETFSFPISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 347 KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 234
           +D E DKI ++V  HL K  K +  +   L K    KE
Sbjct: 85  EDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 165 LTCWSQDCHQDLRWAQT*WSYTFTFLQVIRQY 70
           LTCW++D   D+  +   W   +TF+Q I ++
Sbjct: 196 LTCWNRDDKTDMPSSPREW---YTFVQSISKH 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,372
Number of Sequences: 5004
Number of extensions: 32229
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)