Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O13
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   138   2e-33
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   138   2e-33
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z46812-6|CAA86848.2|  546|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z37093-8|CAA85469.2|  546|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    27   7.2  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  138 bits (333), Expect = 2e-33
 Identities = 64/118 (54%), Positives = 83/118 (70%)
 Frame = -2

Query: 362 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 183
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 182 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG 9
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  138 bits (333), Expect = 2e-33
 Identities = 64/118 (54%), Positives = 83/118 (70%)
 Frame = -2

Query: 362 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 183
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 182 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG 9
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = -2

Query: 410 IRPADAFFRLPTQGKMRSVTVKDVEQDKI-VKTVAAHLKKTGKVKVPEHMDLVKTARFKE 234
           ++ ++A F+ P+Q    S+TV+D+ Q K  ++  +A      +   P+  +  ++ R   
Sbjct: 639 VQHSNALFKKPSQDMSASLTVRDMAQQKTELRVSSASTPTKTRASPPKRAESNQSVRTSG 698

Query: 233 LAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNG 108
            +        V+ +A     Y+  P  V  V + F G +RNG
Sbjct: 699 SSN-----SVVQHSASSSTDYV--PTSVSAVPEYFDGPRRNG 733


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 170 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGR 3
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGR 195


>Z46812-6|CAA86848.2|  546|Caenorhabditis elegans Hypothetical
           protein ZK669.1b protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 242
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531


>Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 242
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760


>Z37093-8|CAA85469.2|  546|Caenorhabditis elegans Hypothetical
           protein ZK669.1b protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 242
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 495 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531


>Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 DLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 242
           D+GD   S   + V   +DGS  H++ I++I   +++
Sbjct: 724 DMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760


>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 202 CVVLPSFVIFTFAHLLESRL 143
           C+ +PS +IFTF  +   RL
Sbjct: 289 CIAIPSLIIFTFRFIKNQRL 308


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 157 LESRLSPRSSVGANVMEL 104
           + SRLSPRS +G N+ E+
Sbjct: 75  ISSRLSPRSRLGNNIFEM 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,738,963
Number of Sequences: 27780
Number of extensions: 194003
Number of successful extensions: 515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)