Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O13
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.34 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.60 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.34
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 160 LLESRLSPRSSVGANVMELHLHISA 86
           LL++RL+P SS+  ++   H H+S+
Sbjct: 268 LLKARLNPNSSLQPSLASHHSHLSS 292


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 318 NCRCSFKKNGQSQGT*AHGSCKDSSLQRAGSV 223
           N   SF  NG+ +   AHG  ++ +LQ+AG V
Sbjct: 412 NATLSFL-NGEFEVEPAHGEDREEALQKAGIV 442


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 201 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 299
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 201 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 299
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 187 SFVIFTFAHLLESRLSPRSSVGANVME 107
           +F+I  +A LL +R    + + ANV E
Sbjct: 418 AFIILQYAGLLRNRSEYLNHLRANVAE 444


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 383 TGRKHRPAEF 412
           TGR+H PA+F
Sbjct: 398 TGREHDPAKF 407


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 157 LESRLSPRSSVGANVMELHLHISAGHQAVLH 65
           LE R     S+ ANV++L  +  A H  +L+
Sbjct: 376 LELRQRSSKSLLANVLDLEDNALASHNNLLN 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,889
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)