Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O12
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   3.4  
11_02_0102 + 8314115-8314540                                           27   7.7  

>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 478 RHAEWXGPCLGPKPAD---ECKRDFSDEVLKAGQTVIGLQAGSNKG 350
           +++++ GPCL   P D    C++D++ +  +  +  +G   G+  G
Sbjct: 79  KNSKYKGPCLATNPIDRCWRCRKDWATDRKRLARCAMGFGRGATGG 124


>11_02_0102 + 8314115-8314540
          Length = 141

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 363 PACR-PITVCPAFRTSSEKSRLHSSAGLGPRQGPXHSACL*VSRPRANS 506
           P CR P  V     + + + R  +  GLGPR+G   S+C+  S  R  S
Sbjct: 23  PGCRRPRLVELGASSGATRQRESNDTGLGPRRGRPPSSCVDGSLGRRRS 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,496
Number of Sequences: 37544
Number of extensions: 274337
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)