Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_O11
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 153 9e-38
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 149 1e-36
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 128 1e-31
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.0
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.4
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 27 5.5
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 7.3
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 7.3
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849... 27 7.3
11_06_0081 + 19886848-19888050,19888243-19888896 27 9.6
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319... 27 9.6
01_07_0042 + 40697153-40697407,40697479-40698081 27 9.6
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 153 bits (370), Expect = 9e-38
Identities = 71/108 (65%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Frame = -1
Query: 372 TIRTXKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 196
T+RT KFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 195 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKN 52
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKN
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKN 118
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 149 bits (361), Expect = 1e-36
Identities = 70/108 (64%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Frame = -1
Query: 372 TIRTXKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 196
T+RT KFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 195 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKN 52
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKN
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKN 118
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 128 bits (310), Expect(2) = 1e-31
Identities = 59/89 (66%), Positives = 74/89 (83%), Gaps = 1/89 (1%)
Frame = -1
Query: 372 TIRTXKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 196
T+RT KFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 195 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 109
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 24.6 bits (51), Expect(2) = 1e-31
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 108 HGLYEKKRPTRKQRKERKN 52
+GL K +RKQ KERKN
Sbjct: 128 NGLATKVEKSRKQMKERKN 146
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 178 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 77
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 212 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLXVRIVA 376
PN S +TL L + + L +GFP CK + + + LL + L I+A
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILA 724
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 263 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLXVRIVAVPSLI 391
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 238 YSRCSVRIR-FQDKLRRWQINWI 173
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 27.1 bits (57), Expect = 7.3
Identities = 25/102 (24%), Positives = 50/102 (49%)
Frame = -1
Query: 378 TATIRTXKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 199
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 198 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 73
G GK+T LIY+ + F+ + + +++K R T++
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKE 261
>01_02_0086 -
10979236-10979396,10980288-10980798,10984446-10984977,
10984983-10985002
Length = 407
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 317 FAMFYIQENQLSARPRSVRSSPKCTRL 237
F++ + ++N+ + PRS S+PKC L
Sbjct: 381 FSIQFYKKNETATSPRSSSSAPKCDSL 407
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 143 ARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTV 289
++ VS +++ P PPP P TN + +Y+ + ++VL V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300
>08_02_0800 +
21330446-21330722,21331040-21331182,21331925-21331978,
21332065-21332130,21333075-21333096,21333347-21333460,
21334153-21334278,21334891-21334925,21335709-21335809,
21335911-21335971,21336482-21336572,21337657-21337842,
21338755-21338922,21339006-21339208,21339313-21339431,
21339910-21339928,21340092-21340130,21340238-21340465,
21340987-21341088,21341842-21341889,21343622-21343765,
21343873-21343968,21344224-21344325,21345188-21345274
Length = 876
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 26 WYRGPSSF*FLRSLRCLRVGLFFSYRPWRANLCLGSNFLARSSVS*IKANPVDLP 190
W+RG +++C V +S R R LC GSN L S S + A + +P
Sbjct: 355 WFRGQDGAYRQLAVKC--VNSTYSSRLPRYTLCYGSNELVMCSFSPLGAAILQIP 407
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 137 FLARSSVS*IKANPVDLPPPKFVLKPN-TNTTSGVTLYILAS 259
+ +SSV + + LPPP FV P +NT + + Y + S
Sbjct: 134 YRTQSSVRSVSSTCKPLPPPPFVRDPKFSNTRTTINSYAVVS 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,612,939
Number of Sequences: 37544
Number of extensions: 258818
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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