Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O10
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    87   1e-18
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.9  
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    25   7.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = -3

Query: 565 AAXVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 386
           AA VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L G SKE
Sbjct: 9   AADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKE 67

Query: 385 DAQKAYIEIVEGLIASIGLK 326
           DA   YI  V+ L    G+K
Sbjct: 68  DAASEYISFVDELKTKYGMK 87


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 196 HFCLKCFFFKNTNSY 152
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = -3

Query: 529  DAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHKL-AGTSKEDAQKAYIE 362
            DA LLN+Y +F+Q  + V +A    +  L + +K +    +W        KE A+K++ E
Sbjct: 3316 DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKDTNVYALKESAKKSHAE 3375

Query: 361  IVEGL 347
            + + L
Sbjct: 3376 LFKVL 3380


>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 385 PPSKCRPVCAKRQIWLYPSSLEDQVYWLDRH 477
           PP     +     +W Y  S  D +Y L++H
Sbjct: 85  PPGTRESLLQSAVVWEYQKSRNDNLYLLEKH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,081
Number of Sequences: 5004
Number of extensions: 42255
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)