Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_O07
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 151 6e-38
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.41
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 28 0.72
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 2.2
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 26 2.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 2.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.8
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 25 5.1
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 5.1
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 8.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 8.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 8.9
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 151 bits (366), Expect = 6e-38
Identities = 78/171 (45%), Positives = 109/171 (63%), Gaps = 6/171 (3%)
Frame = -2
Query: 516 IGFXATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHI 337
IG+ TISAPHMHA AL++L+ L PG ALD+GSGSGYL A MA M+ G V GIEHI
Sbjct: 53 IGYGVTISAPHMHATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTVKGIEHI 112
Query: 336 SELVNLATKNIQND------NPSLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLP 175
+LV + KN+ D + +R+++ VGDGR+G + + AIHVGA+A LP
Sbjct: 113 PQLVETSKKNLLKDINHDEVLMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGASASELP 172
Query: 174 QALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKLMSVIYVPLT 22
Q L+DQLK G++++P+G Q++ ++K + G + + L V YVPLT
Sbjct: 173 QKLVDQLKSPGKILIPIGTY--SQNIYLIEKNEQGKISKRTLFPVRYVPLT 221
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 30 EHKSHSSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVS 155
E+ SH+ +LQ P+ PE + VH P+A + + LP S
Sbjct: 76 EYNSHNKHALQNSQLPLPKTPEKSTVHRPKANKVEVTDLPSS 117
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 0.72
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = -2
Query: 456 KNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLS 277
K L + L+VG G+G LT ML + +V+ +E + TK +Q P
Sbjct: 45 KADLKQSDTVLEVGPGTGNLT---VRMLEKARKVIAVEMDPRMAAEITKRVQG-TP---K 97
Query: 276 SERIKLVVGD 247
+++++V+GD
Sbjct: 98 EKKLQVVLGD 107
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 66 LFHPVLYQPESNVVHHPQALQELLA--SLPVSIDQLELVVKWELQ 194
L P+ +P S V +P + + + LP+ ++Q VV+WE +
Sbjct: 303 LDEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFK 347
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 2.9
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Frame = -2
Query: 438 GEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKL 259
G+K LD+G G G L+ MA LG + V ++ + +A K+ D P L + R++
Sbjct: 78 GKKILDIGCGGGILSESMA-RLGAS--VTAVDASPMAIEVAKKHASLD-PVL--NGRLEY 131
Query: 258 VVGDGRLGYPSEAPYSAIHVGAAAPTLPQ------ALIDQLKPGGRLIV 130
+ G G + + + Q +L++++KP GRL++
Sbjct: 132 IHGSVE-GSQLPTTFDVVTCMEVLEHVEQPRDFLFSLMEKVKPNGRLVL 179
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 46 HQFLYSCCSILCFINLSQMLFTTLRPYRN 132
H +SCCS++ NL L L+ Y N
Sbjct: 1780 HTLYFSCCSMIAKENLDDQLRELLKNYFN 1808
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 341 IYQNL*IWQPKTSKMTTQAYSHLRGLNL*LVMVVSVIH-LKPLTVQFMSGL 192
+Y NL +P + + Q Y HL G V+ + P+ VQFM G+
Sbjct: 423 LYMNLAFVEPSSKLLEDQTYLHLFGSIYNSFREERVMFWIFPIAVQFMRGI 473
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 147 PVSIDQLELVVKWELQPRHELHCKG 221
P++ + +LVV++E+ P L+C G
Sbjct: 110 PINEPEKDLVVQYEVNPEEGLNCGG 134
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 296 SFWMFLVAKFTSSDICSIPTTLPVSPNIMAIQAVR*PDPEPTSKAFS 436
SF LV K + D+ P S I + + P PEPT A S
Sbjct: 862 SFNKPLVEKESKQDVSDTSDRSPFSFKAFGIDSKKSPTPEPTEMAES 908
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 471 ALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEH 340
AL K ++ G + ++ G+GS ++ ++ +G GR+ E+
Sbjct: 93 ALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEY 136
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 326 TSSDICSIPTTLPVS 370
+S D CSIP TLP S
Sbjct: 222 SSEDSCSIPETLPFS 236
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 420 VGSGSGYLTACMAMMLGETGRVV 352
+G G T+C+A+M G+T +V+
Sbjct: 53 IGIDLGTTTSCLAIMEGQTPKVI 75
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 42 HSSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVSIDQLELVVKWELQPRHELHCKG 221
H S+S + HP HH Q ++LL + + +EL+++ E H C+G
Sbjct: 1668 HDSLSWKTFIHPD---------HHHQFQEKLLNLKTLELGDIELLLRMEDGNYHWHLCRG 1718
Query: 222 L 224
L
Sbjct: 1719 L 1719
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,183
Number of Sequences: 5004
Number of extensions: 49178
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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