Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O06
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   104   1e-23
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    53   4e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    53   4e-08
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    35   0.010
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  104 bits (249), Expect = 1e-23
 Identities = 45/51 (88%), Positives = 49/51 (96%)
 Frame = -1

Query: 711 QELFKRXSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 559
           QE+F+R  +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 375 QEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 20/49 (40%), Positives = 33/49 (67%)
 Frame = -1

Query: 708 ELFKRXSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 562
           E + R   +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 390 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 20/49 (40%), Positives = 33/49 (67%)
 Frame = -1

Query: 708 ELFKRXSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 562
           E + R   +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 386 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = -1

Query: 705 LFKRXSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 565
           LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL++EY+
Sbjct: 387 LFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 383 SYYINTKSKSIVDLSKGERWKGG 451
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 410 FCFSYLYSNFNSFRLQHA**NNLGSTR 330
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 310 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 221
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,907
Number of Sequences: 5004
Number of extensions: 38717
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)