Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_O01
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    31   0.19 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.0  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   4.0  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 443 SKGISDAYCFTQDQLDLCHRLALNPTILDAVQLIEKKCYKRNYW 312
           S  +S AY FT + L  CH L L+    D +   E +  KR ++
Sbjct: 309 SSRLSQAYTFTNNALLCCHELGLHKDFSDVLTSHESRLSKRVFY 352


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 563 FFLAFPSNSQFTQEQQIYCLKISCSATSFLNKA 661
           + L     S+    QQ+ CL+I C+++SF + A
Sbjct: 253 YLLNLVKTSESLSSQQMSCLRICCNSSSFWSAA 285


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 5   QYEHVQQVVCK*FQGIRHGHSKL*PGSTICVIHNFILLSDH 127
           QY     + CK    IR     +  G  +C +HNFILL  H
Sbjct: 135 QYMESTTLTCK---TIRDPKLSIYVGRRLCELHNFILLHPH 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,873
Number of Sequences: 5004
Number of extensions: 50983
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)