Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N24
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1166 - 30876802-30876899,30877233-30878685 32 0.23
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 32 0.30
05_05_0309 - 23987669-23988042,23989485-23989560 32 0.30
03_02_0817 + 11492699-11492774,11493605-11493978 32 0.30
01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097 32 0.30
01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651 31 0.70
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 30 1.2
11_01_0203 - 1610086-1610192,1610620-1610669,1610888-1611348 29 2.1
03_03_0278 - 16126803-16129049 29 2.1
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 28 3.7
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 3.7
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 27 6.5
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 27 8.7
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 27 8.7
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 236 WLRAPPEELSPPRALPAPVPQSRASVF*GPSHRTFVAGKDLITKD 370
+L PP+ SPP LP P P R ++ PS + K +K+
Sbjct: 210 YLWTPPKSSSPPTLLPPPPPPPREKMYPNPSGEPWHTRKPRFSKE 254
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 394
GEKL D EV E+ ++ D DG I Y F+K +MA
Sbjct: 114 GEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 148
>05_05_0309 - 23987669-23988042,23989485-23989560
Length = 149
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 394
GEKL D EV E+ ++ D DG I Y F+K +MA
Sbjct: 114 GEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 148
>03_02_0817 + 11492699-11492774,11493605-11493978
Length = 149
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 394
GEKL D EV E+ ++ D DG I Y F+K +MA
Sbjct: 114 GEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 148
>01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097
Length = 171
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 394
GEKL D EV E+ ++ D DG I Y F+K +MA
Sbjct: 114 GEKLTDEEVEEMIREA--DVDGDGQINYDEFVKVMMA 148
>01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651
Length = 187
Score = 30.7 bits (66), Expect = 0.70
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA*K 388
GE+L D EV E+ + D DG I Y F+K +MA K
Sbjct: 114 GERLTDEEVGEMISEA--DVDGDGQINYEEFVKCMMAKK 150
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 224 GSAGWLRAPPEELSPPRALPAPVPQSRASVF*GPS 328
G A +PP PPR L +P+P+SRA PS
Sbjct: 3 GLAAADNSPPVAAPPPRRLSSPLPRSRAPPSPSPS 37
>11_01_0203 - 1610086-1610192,1610620-1610669,1610888-1611348
Length = 205
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 394
G+ L D E+A++ + D DG I Y FLK +MA
Sbjct: 119 GDPLSDDELADMLHEA--DSDGDGQINYNEFLKVMMA 153
>03_03_0278 - 16126803-16129049
Length = 748
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = -3
Query: 447 EDDDGMIPYAAFLKKVMA*KTSQLVISLV 361
+D+DGM Y AF++KV++ + QL IS +
Sbjct: 535 DDEDGMPRYYAFIQKVLSLEPFQLKISFL 563
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 244 PQPARAPSHVDIPYNILDTDKPLFYTNNIISTVLYNFL 131
PQP +APS I N + + P+ Y N +ST YN L
Sbjct: 53 PQP-QAPSVRTICCNDREANAPVGYKGNSVSTTKYNVL 89
>02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 489 DSEVAEVTKDCMDPEDDDGMIPYAAF 412
D + AEVTKD D +D DGM A F
Sbjct: 931 DGDGAEVTKDGDDSDDSDGMDDDAMF 956
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 221 AGSAGWLRAPPEELSPPRALPAPVPQSRA 307
AG AG L E +P ALP P P + A
Sbjct: 418 AGDAGVLHGKAHEGAPSMALPPPAPSAAA 446
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 115 YVQSKVESCTKQLILCCSYKKGV 183
Y+ KV SCT++ IL Y KG+
Sbjct: 188 YLDEKVGSCTRRTILYQEYVKGI 210
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 492 DDSEVAEVTKDCMDPEDDDGMIPYAA 415
++ E EV D D D+DG+ PY +
Sbjct: 157 ENEEDHEVLHDAFDDNDEDGLAPYGS 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,540
Number of Sequences: 37544
Number of extensions: 208477
Number of successful extensions: 891
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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