Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N24
         (506 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    63   6e-12
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    30   0.039
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    28   0.21 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    28   0.21 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    27   0.36 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.64 
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   1.5  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   3.4  
AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal ...    23   5.9  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   7.9  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   7.9  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   7.9  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 62.9 bits (146), Expect = 6e-12
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = -3

Query: 504 GEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVM 397
           GE+LDD E+  V KDCMDPEDDDG IPYA FLKK+M
Sbjct: 115 GERLDDVELDNVMKDCMDPEDDDGNIPYAPFLKKMM 150


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 0.039
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 226 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 119
           P+  DI + I+   K LFYT N I+ TVL +FL + V
Sbjct: 217 PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLV 253


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = -2

Query: 220 HVDIPYNILDTDKPLFYTNNII--------STVLYNFLPLTVHTKVRLNI 95
           ++DI +NI    K LFYT NII         TVL  +LP     KV L+I
Sbjct: 230 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 279


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = -2

Query: 220 HVDIPYNILDTDKPLFYTNNII--------STVLYNFLPLTVHTKVRLNI 95
           ++DI +NI    K LFYT NII         TVL  +LP     KV L+I
Sbjct: 230 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSI 279


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = -2

Query: 220 HVDIPYNILDTDKPLFYTNNII--------STVLYNFLPLTVHTKVRLNI 95
           ++DI +NI    K LFYT N+I         T+L  +LP     KV L+I
Sbjct: 226 YLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSI 275


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 504  GEKLDDSEVAEVTKDCMDPEDDDG 433
            G K+++  +AEV K  +D EDD G
Sbjct: 1250 GLKMENGVIAEVEKSQVDGEDDTG 1273


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 238 PARAPSHVDIPYNILDTDKPLFYTNNII 155
           P  A  + DI +NI    K LFYT N+I
Sbjct: 233 PCCAEPYPDIFFNITLRRKTLFYTVNLI 260


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 214 DIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 119
           DI +NI    K LFYT N II  V  +FL + V
Sbjct: 228 DIIFNITLRRKTLFYTVNLIIPCVGISFLSVLV 260


>AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal
           carrier protein AP-1 protein.
          Length = 171

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 492 DDSEVAEVTKDCMDP 448
           DD    +VT++C+DP
Sbjct: 78  DDVNKVQVTRECLDP 92


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -1

Query: 179 PFLYEQHNINCFVQLSTFDCTY*SKIKYTVKHTLCVFLNYYLFIY 45
           PFL     I CFV  S  +C   S +   +       L++ LF +
Sbjct: 27  PFLPTSFLIYCFVSPSCLEC---SSVPLFINFIFMFLLHFVLFSF 68


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 239 LRAPPEELSPPRALPAPVPQ 298
           LRAPP     P+  P+  PQ
Sbjct: 277 LRAPPSSQQQPQQQPSQQPQ 296


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 227 SAGWLRAPPEELSPPRALPAP 289
           + G L+ PP   S P + P+P
Sbjct: 862 TGGMLKMPPSSNSSPSSYPSP 882


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 453,204
Number of Sequences: 2352
Number of extensions: 8242
Number of successful extensions: 82
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)