Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N23
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...   105   7e-24
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    32   0.078
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   0.96 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   9.0  

>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  105 bits (251), Expect = 7e-24
 Identities = 64/182 (35%), Positives = 100/182 (54%)
 Frame = -2

Query: 619 KDVILERALEFVSQTGWSVESLSAGAKSAGYPTITHGLFPNGGGDLIHYFNIKCNQQLAE 440
           K +ILE ALE V Q G++ +++  G ++ GY  ++  LFP+G  DLI YF +K    L+ 
Sbjct: 48  KALILENALEHVPQLGFTEDAIVQGGQALGYSNLSKALFPSGPMDLISYFFLKQRYALSS 107

Query: 439 QMKLWPQEDLKGGLKVPAKFIENAIVTRLLMIKPYKSTWPKAMAIQTLPNNVPNGLATLL 260
              L P   L    +   + ++  I +RL   +      P+ +AI T P+N+   L++L 
Sbjct: 108 ---LKPH--LTTIPETSGRVVQ-LIWSRLQGNRDIVQHLPQMIAICTYPSNLRKSLSSLA 161

Query: 259 SLVDDICYHSGDRSVDFNWYIRRVGLAGIYKAAELFYLTDNSQENNATRSFVSSRIRDAQ 80
            L D+I Y + D+S DF WY +R  ++ IY A+ELF   D S    AT +FV  RI+ A+
Sbjct: 162 ELSDEILYLAQDKSADFQWYTKRAAISAIYSASELFMSRDTSPNFEATYNFVQHRIQHAK 221

Query: 79  VI 74
            +
Sbjct: 222 AL 223


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 31.9 bits (69), Expect = 0.078
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = -2

Query: 457 NQQLAEQMKLWPQEDLKGGLKVPAKFIENAIVTRLLMIKPYKSTWPKAMAIQTLPNNV 284
           NQ++ + + LWP+++L+  L  P K ++ +I  RL  + P ++   +  A+  L +NV
Sbjct: 4   NQKITKAVALWPKDELRPWLSFP-KTLDTSIRARLQKMPPQQAN-KQLNALNNLLDNV 59


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
            zf-fungal binuclear cluster type |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 487  DLIHYFNIKCNQQLAEQMKLWPQEDLK 407
            DL+ YF    N  L +   LWP +DL+
Sbjct: 925  DLMSYFGFAKNSDLQQWNGLWPSDDLR 951


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -2

Query: 481 IHYFNIKCNQQL---AEQMKLWPQEDLKGGLKVPAKFIENAIVTRLLMIKPYKSTWPKAM 311
           IH  +I  N+QL    EQ K  P E     LK+      N  V  L+  +  +S   + +
Sbjct: 288 IHDHHIINNEQLIDLTEQEKKQPNESNLSNLKIETVLFSNCTVFLLIDTREIRSPLDRNL 347

Query: 310 AIQTLPNN 287
            I  L N+
Sbjct: 348 IIDKLTND 355


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 526 DSQLILHLHSKTLLTI 573
           DSQL LHLHS+ + T+
Sbjct: 271 DSQLFLHLHSRIVQTL 286


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 362 NKATHDKTIQEYMA*GNGNTNSSKQRSKWLSYFIIVS 252
           N+  +  + + +   GNGN  + + R KWL   + ++
Sbjct: 260 NERNNSNSPRNFSTHGNGNGENGQPRRKWLEEKVYIN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,100
Number of Sequences: 5004
Number of extensions: 51433
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)