Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N23
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427...    32   0.32 
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966     31   0.75 
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041     31   0.75 
03_06_0180 + 32175658-32178145,32178765-32178808                       30   1.3  

>06_03_0256 -
           18841627-18841993,18842087-18842415,18842512-18842749,
           18844091-18844373,18844773-18844989,18845067-18845360
          Length = 575

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 157 LFYLTDNSQENNATRSFVSSRIRDAQVIXGCSKLKPGYRRPTNIN 23
           L Y  D S   N  R FV      A+ +  CSKL+PG ++P NI+
Sbjct: 276 LSYFQDPSILQNH-RPFVPPNYYPAEQVAPCSKLRPGAQQPVNID 319


>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
          Length = 766

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 307 IQTLPNNVPNGLATLLSLVDDICYHSGDRSVDFN-WYIRRVG 185
           ++ L  ++P G A + + +   CY++  R +D+N W I   G
Sbjct: 92  VEVLSISLPTGQARVTNSISSACYNTSSRDMDYNDWQINFTG 133


>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
          Length = 425

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 157 LFYLTDNSQENNATRSFVSSRIRDAQVIXGCSKLKPGYRRPTNIN 23
           L Y  D S   N  R FV      A+ +  CSKL PG ++P NI+
Sbjct: 95  LSYFQDPSILQNH-RPFVPPNYYPAEQVAPCSKLHPGAQQPVNID 138


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 220 SVDFNWYIRRVGLAGIYKAAELFYL 146
           ++ +NW IR + +AG Y++A LFYL
Sbjct: 109 ALPWNWLIRGLTMAGDYRSALLFYL 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,422,911
Number of Sequences: 37544
Number of extensions: 328752
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)