Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_N23
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 282 GTLFGRVCIAIALGHVLLYGFI 347
           GT+FG V IAIA+  V L G I
Sbjct: 194 GTVFGSVAIAIAI--VELIGII 213


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 55   KPGYRRPTNINCSLC 11
            +P YRR  N+N ++C
Sbjct: 962  RPAYRRRLNVNETVC 976


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 317 GNGNTNSSKQRS 282
           GNGNTNSS + S
Sbjct: 543 GNGNTNSSARDS 554


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 322  PKAMAIQTLPNNVPNGLATLLSL 254
            P+A+ I  LP   PNG+ T  +L
Sbjct: 1227 PQALFISWLPPLEPNGIITKYNL 1249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 322  PKAMAIQTLPNNVPNGLATLLSL 254
            P+A+ I  LP   PNG+ T  +L
Sbjct: 1223 PQALFISWLPPLEPNGIITKYNL 1245


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 565 VESLSAGAKSAGYPTITHGLFPNGGGDLIHYFNIKCNQQL 446
           + SLS   K + Y    +  + N     + Y+NI   +Q+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 565 VESLSAGAKSAGYPTITHGLFPNGGGDLIHYFNIKCNQQL 446
           + SLS   K + Y    +  + N     + Y+NI   +Q+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 565 VESLSAGAKSAGYPTITHGLFPNGGGDLIHYFNIKCNQQL 446
           + SLS   K + Y    +  + N     + Y+NI   +Q+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 565 VESLSAGAKSAGYPTITHGLFPNGGGDLIHYFNIKCNQQL 446
           + SLS   K + Y    +  + N     + Y+NI   +Q+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,390
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)