Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_N22
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 45 4e-05
11_01_0750 - 6315126-6315896,6316371-6316784 42 3e-04
11_01_0771 + 6453130-6454488 42 4e-04
11_02_0011 - 7337618-7338496,7338596-7338991 42 5e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 42 5e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 38 0.008
05_06_0044 - 25150322-25151260 33 0.13
01_01_1152 + 9170628-9171899 33 0.23
01_06_0824 - 32243495-32244319,32244449-32244859 32 0.41
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 28 5.0
11_01_0767 + 6438648-6438809,6439146-6440000 28 6.7
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Frame = -2
Query: 459 DVKLPRFQISTNVVLNKPLNDMGV---YDIFQPDLANFQRITKENIFVSAIVHKADIEXX 289
D+++PRF++S +N+ L MG+ +D+ + DL+ I E + V ++H+A +E
Sbjct: 289 DLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGM--IDGELVVVEKVMHRAVVEVN 346
Query: 288 XXXXXXXXXXXXXXTD---RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 136
+++P F A+ PF +FV+E+ + V+F+G PT
Sbjct: 347 EEGTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPT 401
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = -2
Query: 462 VDVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADI 298
V + +P F+IS + + L DMG+ F + A F + KE+ +F+S ++HKA +
Sbjct: 280 VGISVPNFKISFQIDVKDFLKDMGLELPFLRE-AEFSDMIKEDDSSGPLFLSDVLHKAVL 338
Query: 297 EXXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPT 136
E + A F A+ PF + + E+ + TVIF G P+
Sbjct: 339 EVDQKGIEETSVSMGLGKP-LPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPS 391
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = -2
Query: 459 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 295
+ ++P+F++S + L +G+ F P+LA+ + +++ +FV I HKA IE
Sbjct: 335 EFRVPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIE 394
Query: 294 XXXXXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKPTV 133
P F A PF YF++E+ ++ V+F+G P++
Sbjct: 395 VNEEGTVAAAATMTRMLPSGVPPPPVDFVAEHPFAYFIVEEMSSAVVFAGHIVDPSM 451
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 41.5 bits (93), Expect = 5e-04
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Frame = -2
Query: 591 SMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLN 412
SM + LP R + + A + F L+ E D+++PRF++S +N
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSF--LRDHRPTRRREVGDLRVPRFKVSFYSQIN 320
Query: 411 KPLNDMGV---YDIFQPDLANFQRITKEN---IFVSAIVHKADIEXXXXXXXXXXXXXXX 250
L MGV +D + DL+ + + V + H+A +E
Sbjct: 321 GVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACT 380
Query: 249 XTD-RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 136
+S P F A+ PF +FV+E+T+ V+F+G PT
Sbjct: 381 IRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAGHVLDPT 420
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Frame = -2
Query: 609 GTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQIS 430
G ++SM ++LP + + + + +N + F L+K + + KLP+F+IS
Sbjct: 308 GDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEF--LEKHIPTRQVTVGQFKLPKFKIS 362
Query: 429 TNVVLNKPLNDMGVYDIFQPDLANFQRITK---ENIFVSAIVHKADIEXXXXXXXXXXXX 259
+ L +G++ F + + + +N+FVS++ HK+ +E
Sbjct: 363 FGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAAT 422
Query: 258 XXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSG 154
T R SAP F A+ PF++ + E T V+F G
Sbjct: 423 AAVITLR-SAPIAEDFVADHPFLFLIQEDMTGVVLFVG 459
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = -2
Query: 453 KLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK---ENIFVSAIVHKADIE-XXX 286
KLP+F+IS + L +G+ +F ++ + + +N+FVS++ HK+ IE
Sbjct: 607 KLPKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDSPGAQNLFVSSVFHKSFIEVNEE 666
Query: 285 XXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKP 139
R F A+ PF++ + E T ++F G P
Sbjct: 667 GTEATAAVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVILFIGHVVNP 715
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 37.5 bits (83), Expect = 0.008
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Frame = -2
Query: 597 KYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVV 418
++SM ++LP + ++ A +N + F L+K + + KLP+F+IS
Sbjct: 104 QFSMYILLPEAQD---GLWSLAAKLNSEPEF--LEKRIPTRQVTVGKFKLPKFKISFGFE 158
Query: 417 LNKPLNDMGVYDIF--QPDLANFQRIT-KENIFVSAIVHKADIEXXXXXXXXXXXXXXXX 247
+ L +G+ F + DL + N+FVS++ HK+ ++
Sbjct: 159 ASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTEAAAASAAVV 218
Query: 246 TDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKP 139
+ R SAP F A+ PF++ + E T V+F G P
Sbjct: 219 SFR-SAPVTVDFVADHPFLFLIREDMTGVVLFIGHVVNP 256
>05_06_0044 - 25150322-25151260
Length = 312
Score = 33.5 bits (73), Expect = 0.13
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Frame = -2
Query: 609 GTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQIS 430
G D ++M + LP R + ++ + A N ++ + ++ K+P+F++S
Sbjct: 148 GGDKMFAMYIYLPDDRDGLPELARKLAS-NPAAFLRRTIVPAQPVAVGEL--KIPKFEVS 204
Query: 429 TNVVLNKPLNDMGVYDIFQPDLAN-FQRIT---KENIFVSAIVHKADI----EXXXXXXX 274
V ++ L + G+ F P N F + + VS+++H+ + E
Sbjct: 205 LKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGTVAAAG 264
Query: 273 XXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPTVY 130
F A+ PF++F++E+ + V+F+G P ++
Sbjct: 265 TVGEIMGFAMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQVVNPLLH 312
>01_01_1152 + 9170628-9171899
Length = 423
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -2
Query: 450 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXX 271
+P+F+ S + +GV F + + +F++ + H+A IE
Sbjct: 314 VPKFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVA 373
Query: 270 XXXXXXXXTDRISA--PA-FHANRPFVYFVMEKTTTTVIFSGIYSKP 139
+ S+ P F A+RPF++ V+E+ T V+F G P
Sbjct: 374 AASTAVVMMQKGSSLPPVDFVADRPFLFAVVEELTGAVLFLGHVVNP 420
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 31.9 bits (69), Expect = 0.41
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Frame = -2
Query: 450 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK-----ENIFVSAIVHKADIEXXX 286
+PRF +S + L +G+ F+ A+ + + E I VSA+ H++ +E
Sbjct: 292 VPRFTLSYKTNAAETLRQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNE 351
Query: 285 XXXXXXXXXXXXXTDRISAPA-------FHANRPFVYFVMEKTTTTVIFSGIYSKPT 136
T +AP+ F A+ PF++ + E T V+F+G + P+
Sbjct: 352 EGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLTGVVVFAGQVTNPS 408
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 294 PLYQLYALWPTRIYSPL*SAGSWLSLAGICRTLPCRLMAYLGR 422
P+ +ALW T + L A SWL +A + + P + YL R
Sbjct: 69 PVADAHALWVTSVACELWLAASWL-IAQLPKLSPANRVTYLDR 110
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 222 FHANRPFVYFVMEKTTTTVIFSGIYSKPT 136
F A+ PF +F++E+ + ++F+G P+
Sbjct: 307 FVADHPFAFFIVEERSQAIVFAGHVLDPS 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,686
Number of Sequences: 37544
Number of extensions: 253423
Number of successful extensions: 598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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